<?xml version="1.0" encoding="utf-8" standalone="yes"?><rss version="2.0" xmlns:atom="http://www.w3.org/2005/Atom"><channel><title>zookeeper on Digi Hunch</title><link>https://static.digihunch.com/tag/zookeeper/</link><description>Recent content in zookeeper on Digi Hunch</description><generator>Hugo -- gohugo.io</generator><language>en-US</language><lastBuildDate>Wed, 02 Apr 2025 14:06:01 -0400</lastBuildDate><atom:link href="https://static.digihunch.com/tag/zookeeper/index.xml" rel="self" type="application/rss+xml"/><item><title>Etcd – the key-value store for Kubernetes</title><link>https://static.digihunch.com/2022/06/etcd-the-key-value-store-for-kubernetes/</link><pubDate>Tue, 14 Jun 2022 00:10:00 -0400</pubDate><guid>https://static.digihunch.com/2022/06/etcd-the-key-value-store-for-kubernetes/</guid><description>&lt;img src="https://static.digihunch.com/wp-content/uploads/2025/04/feature-etcd.webp" alt="Featured image of post Etcd – the key-value store for Kubernetes" /&gt;&lt;h2 class="wp-block-heading"&gt;Etcd in Kubernetes&lt;/h2&gt;&#10;&lt;p class="wp-block-paragraph"&gt;In Kubernetes &lt;a href="https://static.digihunch.com/2021/04/preparing-certified-kubernetes-administrator-exam/"&gt;architecture&lt;/a&gt;, &lt;a href="https://etcd.io/"&gt;etcd&lt;/a&gt; is the data store. It stores the desired state of Kubernetes object. API server is the only client that connects to etcd (via &lt;a href="https://grpc.io/"&gt;gRPC&lt;/a&gt; protocol). Cluster builder specifies the endpoint of etcd as a parameter to the kube-api-server process. Other Kubernetes components, whether in the control plane or from the nodes, connect to API server. API server translates their request into etcd query, and then translates etcd query result into what its clients ask for. For this reason, communication with etcd accounts for a lot of network traffic in a Kubernetes cluster.&lt;/p&gt;&#10;&lt;p class="wp-block-paragraph"&gt;The etcd store is a CNCF project for &amp;#8220;a distributed, reliable key-value store for critical data in a distributed system&amp;#8221;, developed by CoreOS team. So it is essentially a distributed key-value store for any distributed application. If an application runs on Kubernetes, it can leverage etcd store, by keeping their configurations in ConfigMap and Secret objects. One key feature is to watch for specific keys or directories for changes, and react to the changes. Voila! This is the underlying mechanism for &lt;a href="https://kubernetes.io/docs/concepts/architecture/controller/"&gt;controller&lt;/a&gt;!&lt;/p&gt;&#10;&lt;p class="wp-block-paragraph"&gt;A Kubernetes cluster may have stacked etcd deployment or connect to an external etcd store.&lt;/p&gt;&#10;&lt;div class="wp-block-image"&gt;&#10;&lt;figure class="aligncenter size-full"&gt;&lt;img loading="lazy" decoding="async" width="848" height="560" src="https://static.digihunch.com/wp-content/uploads/2022/05/stacked.png" alt="" class="wp-image-5250"/&gt;&lt;figcaption class="wp-element-caption"&gt;stacked etcd architecture&lt;/figcaption&gt;&lt;/figure&gt;&#10;&lt;/div&gt;&#10;&lt;div class="wp-block-image"&gt;&#10;&lt;figure class="aligncenter size-full"&gt;&lt;img loading="lazy" decoding="async" width="856" height="601" src="https://static.digihunch.com/wp-content/uploads/2022/05/external.png" alt="" class="wp-image-5251"/&gt;&lt;figcaption class="wp-element-caption"&gt;external etcd architecture&lt;/figcaption&gt;&lt;/figure&gt;&#10;&lt;/div&gt;&#10;&lt;p class="wp-block-paragraph"&gt;In managed Kubernetes services such as EKS in AWS and AKS in Azure, users usually do not directly access etcd store. However, it is still a very important component to understand. Its use case includes:&lt;/p&gt;&#10;&lt;ul class="wp-block-list"&gt;&#10;&lt;li&gt;Configuration sharing&lt;/li&gt;&#10;&lt;li&gt;Service discovery&lt;/li&gt;&#10;&lt;li&gt;Consistency&lt;/li&gt;&#10;&lt;li&gt;Watching mechanism&lt;/li&gt;&#10;&lt;li&gt;Expiry and extension of key &lt;/li&gt;&#10;&lt;/ul&gt;&#10;&lt;p class="wp-block-paragraph"&gt;The consistency use case is based on Raft protocol for distributed consensus.&lt;/p&gt;&#10;&lt;h2 class="wp-block-heading"&gt;Raft protocol&lt;/h2&gt;&#10;&lt;p class="wp-block-paragraph"&gt;I am not an expert in distributed consensus protocols and nor do I intent to cover it in depth. At a high level, I have heard of three of them so far:&lt;/p&gt;&#10;&lt;ul class="wp-block-list"&gt;&#10;&lt;li&gt;Etcd uses Raft protocol&lt;/li&gt;&#10;&lt;li&gt;&lt;a href="https://static.digihunch.com/2020/08/zookeeper/"&gt;Zookeeper&lt;/a&gt; uses ZAB protocol&lt;/li&gt;&#10;&lt;li&gt;&lt;a href="https://static.digihunch.com/2018/03/cassandra-architecture-summary/"&gt;Cassandra&lt;/a&gt; uses paxos protocol&lt;/li&gt;&#10;&lt;/ul&gt;&#10;&lt;p class="wp-block-paragraph"&gt;&lt;a href="https://www.alibabacloud.com/blog/a-brief-analysis-of-consensus-protocol-from-logical-clock-to-raft_594675"&gt;Here&lt;/a&gt; is a good intro to the three protocols. Instead of getting into the fine details, I would like to discuss why we need such a consensus protocol (or consensus mechanism) in distributed systems, which are also decentralized systems.&lt;/p&gt;&#10;&lt;div class="wp-block-image"&gt;&#10;&lt;figure class="aligncenter size-large"&gt;&lt;img loading="lazy" decoding="async" width="1024" height="686" src="https://static.digihunch.com/wp-content/uploads/2025/04/etcd-topology-1024x686.webp" alt="" class="wp-image-13111" srcset="https://static.digihunch.com/wp-content/uploads/2025/04/etcd-topology-1024x686.webp 1024w, https://static.digihunch.com/wp-content/uploads/2025/04/etcd-topology-300x201.webp 300w, https://static.digihunch.com/wp-content/uploads/2025/04/etcd-topology-768x514.webp 768w, https://static.digihunch.com/wp-content/uploads/2025/04/etcd-topology-410x275.webp 410w, https://static.digihunch.com/wp-content/uploads/2025/04/etcd-topology.webp 1138w" sizes="auto, (max-width: 1024px) 100vw, 1024px" /&gt;&lt;figcaption class="wp-element-caption"&gt;Centralized, Decentralized, Distributed systems&lt;/figcaption&gt;&lt;/figure&gt;&#10;&lt;/div&gt;&#10;&lt;p class="wp-block-paragraph"&gt;The reason a distributed system needs consensus protocol, is that a distributed system lacks a single source of truth as centralized systems do. Different parts of the distributed system may receive different signals but they must come to agreement of a single plan to act. Lamport studies this with an analogy of &lt;a href="https://en.wikipedia.org/wiki/Byzantine_fault"&gt;Byzantine Generals&lt;/a&gt; problem, and first proposed Paxos protocol. &lt;a href="https://en.wikipedia.org/wiki/Paxos_(computer_science)"&gt;Paxos&lt;/a&gt; has been an important foundation to modern distributed systems. In Paxos, consensus is achieved in &lt;a href="https://martinfowler.com/articles/patterns-of-distributed-systems/paxos.html"&gt;two phases&lt;/a&gt;, which creates the problem of livelocks. Raft is an alternative to Paxos, and is widely adopted today. &lt;a href="http://thesecretlivesofdata.com/raft/"&gt;Here&lt;/a&gt; is a link to an animated illustration for Raft protocol. The Raft protocol is also used in Redis. It has three roles: Leader, Candidate, and follower. ZAB protocol is similar to Raft, where it needs to select a leader.&lt;/p&gt;&#10;&lt;h2 class="wp-block-heading"&gt;Etcd Lab&lt;/h2&gt;&#10;&lt;p class="wp-block-paragraph"&gt;In troubleshooting, if we suspect that the response from API server is inconsistent with etcd store, we want to directly connect to it.&lt;/p&gt;&#10;&lt;p class="wp-block-paragraph"&gt;Managed Kubernetes services do not expose their etcd store. We can use KinD or Minikube. There are two types of jump box to access etcd store: using etcd Pod, or SSH to a Node. To connect to etcd, we also need the X509 key, certificate and CA&amp;#8217;s certificate, in addition to the endpoint, usually an IP with port 2389. When I connect to Pod shell, I find the command shell not easy to use. They might miss basic command such as ls, or do not support auto completion.&lt;/p&gt;&#10;&lt;p class="wp-block-paragraph"&gt;Take KinD for example, we first create a secret, then we can connect to the node with docker CLI command:&lt;/p&gt;&#10;&lt;div class="highlight"&gt;&lt;pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;-webkit-text-size-adjust:none;"&gt;&lt;code class="language-bash" data-lang="bash"&gt;&lt;span style="display:flex;"&gt;&lt;span&gt;kubectl create ns myns&#10;&lt;/span&gt;&lt;/span&gt;&lt;span style="display:flex;"&gt;&lt;span&gt;kubectl -n myns create secret generic mysecret --from-literal key1&lt;span style="color:#f92672"&gt;=&lt;/span&gt;value1&#10;&lt;/span&gt;&lt;/span&gt;&lt;span style="display:flex;"&gt;&lt;span&gt;kubectl -n myns get secret mysecret -o jsonpath&lt;span style="color:#f92672"&gt;=&lt;/span&gt;&lt;span style="color:#e6db74"&gt;&amp;#39;{.data.key1}&amp;#39;&lt;/span&gt; | base64 -d&#10;&lt;/span&gt;&lt;/span&gt;&lt;span style="display:flex;"&gt;&lt;span&gt;docker exec -it control /bin/bash&#10;&lt;/span&gt;&lt;/span&gt;&lt;/code&gt;&lt;/pre&gt;&lt;/div&gt;&lt;p class="wp-block-paragraph"&gt;From the node, &lt;/p&gt;&#10;&lt;div class="highlight"&gt;&lt;pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;-webkit-text-size-adjust:none;"&gt;&lt;code class="language-bash" data-lang="bash"&gt;&lt;span style="display:flex;"&gt;&lt;span&gt;apt update &lt;span style="color:#f92672"&gt;&amp;amp;&amp;amp;&lt;/span&gt; apt install etcd-client&#10;&lt;/span&gt;&lt;/span&gt;&lt;span style="display:flex;"&gt;&lt;span&gt;etcdctl version&#10;&lt;/span&gt;&lt;/span&gt;&lt;span style="display:flex;"&gt;&lt;span&gt;nc -vz localhost &lt;span style="color:#ae81ff"&gt;2379&lt;/span&gt;&#10;&lt;/span&gt;&lt;/span&gt;&lt;span style="display:flex;"&gt;&lt;span&gt;cat /etc/kubernetes/manifests/kube-apiserver.yaml | grep etcd&#10;&lt;/span&gt;&lt;/span&gt;&lt;span style="display:flex;"&gt;&lt;span&gt;&#10;&lt;/span&gt;&lt;/span&gt;&lt;span style="display:flex;"&gt;&lt;span&gt;export ETCDCTL_API&lt;span style="color:#f92672"&gt;=&lt;/span&gt;&lt;span style="color:#ae81ff"&gt;3&lt;/span&gt;&#10;&lt;/span&gt;&lt;/span&gt;&lt;span style="display:flex;"&gt;&lt;span&gt;export ETCDCTL_CERT&lt;span style="color:#f92672"&gt;=&lt;/span&gt;/etc/kubernetes/pki/apiserver-etcd-client.crt&#10;&lt;/span&gt;&lt;/span&gt;&lt;span style="display:flex;"&gt;&lt;span&gt;export ETCDCTL_KEY&lt;span style="color:#f92672"&gt;=&lt;/span&gt;/etc/kubernetes/pki/apiserver-etcd-client.key&#10;&lt;/span&gt;&lt;/span&gt;&lt;span style="display:flex;"&gt;&lt;span&gt;export ETCDCTL_CACERT&lt;span style="color:#f92672"&gt;=&lt;/span&gt;/etc/kubernetes/pki/etcd/ca.crt&#10;&lt;/span&gt;&lt;/span&gt;&lt;span style="display:flex;"&gt;&lt;span&gt;export ETCDCTL_ENDPOINTS&lt;span style="color:#f92672"&gt;=&lt;/span&gt;&lt;span style="color:#e6db74"&gt;&amp;#39;https://127.0.0.1:2379&amp;#39;&lt;/span&gt;&#10;&lt;/span&gt;&lt;/span&gt;&lt;span style="display:flex;"&gt;&lt;span&gt;etcdctl member list write out&lt;span style="color:#f92672"&gt;=&lt;/span&gt;table&#10;&lt;/span&gt;&lt;/span&gt;&lt;/code&gt;&lt;/pre&gt;&lt;/div&gt;&lt;p class="wp-block-paragraph"&gt;Now we can see the secret object directly with etcd store:&lt;/p&gt;&#10;&lt;div class="highlight"&gt;&lt;pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;-webkit-text-size-adjust:none;"&gt;&lt;code class="language-bash" data-lang="bash"&gt;&lt;span style="display:flex;"&gt;&lt;span&gt;etcdctl get /registry/secrets/myns/mysecret&#10;&lt;/span&gt;&lt;/span&gt;&lt;/code&gt;&lt;/pre&gt;&lt;/div&gt;&lt;p class="wp-block-paragraph"&gt;With get query, when using &amp;#8211;prefix, we can use &amp;#8211;keys-only switch to list keys without values:&lt;/p&gt;&#10;&lt;div class="highlight"&gt;&lt;pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;-webkit-text-size-adjust:none;"&gt;&lt;code class="language-bash" data-lang="bash"&gt;&lt;span style="display:flex;"&gt;&lt;span&gt;etcdctl get --prefix /registry/api --keys-only&#10;&lt;/span&gt;&lt;/span&gt;&lt;span style="display:flex;"&gt;&lt;span&gt;etcdctl get --prefix /registry/namespace -wjson&#10;&lt;/span&gt;&lt;/span&gt;&lt;/code&gt;&lt;/pre&gt;&lt;/div&gt;&lt;p class="wp-block-paragraph"&gt;We can write key-value with put command:&lt;/p&gt;&#10;&lt;div class="highlight"&gt;&lt;pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;-webkit-text-size-adjust:none;"&gt;&lt;code class="language-bash" data-lang="bash"&gt;&lt;span style="display:flex;"&gt;&lt;span&gt;etcdctl put myloc &lt;span style="color:#ae81ff"&gt;0&lt;/span&gt;&#10;&lt;/span&gt;&lt;/span&gt;&lt;span style="display:flex;"&gt;&lt;span&gt;etcdctl get myloc -wjson&#10;&lt;/span&gt;&lt;/span&gt;&lt;/code&gt;&lt;/pre&gt;&lt;/div&gt;&lt;p class="wp-block-paragraph"&gt;In Kubernetes, all the key names start with / which makes the key looks like a POSIX path. Every Kubernetes object is stored in etcd with a unique key following a self-explanatory naming pattern. To display the path, we can also use debug log that records the call to API server:&lt;/p&gt;&#10;&lt;div class="highlight"&gt;&lt;pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;-webkit-text-size-adjust:none;"&gt;&lt;code class="language-bash" data-lang="bash"&gt;&lt;span style="display:flex;"&gt;&lt;span&gt;kubectl get ns myns -v9&#10;&lt;/span&gt;&lt;/span&gt;&lt;/code&gt;&lt;/pre&gt;&lt;/div&gt;&lt;p class="wp-block-paragraph"&gt;Look for curl command such as:&lt;/p&gt;&#10;&lt;div class="highlight"&gt;&lt;pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;-webkit-text-size-adjust:none;"&gt;&lt;code class="language-text" data-lang="text"&gt;&lt;span style="display:flex;"&gt;&lt;span&gt;I0523 22:51:43.517728 32347 round_trippers.go:466] curl -v -XGET -H &amp;#34;Accept: application/json;as=Table;v=v1;g=meta.k8s.io,application/json;as=Table;v=v1beta1;g=meta.k8s.io,application/json&amp;#34; -H &amp;#34;User-Agent: kubectl/v1.23.6 (darwin/amd64) kubernetes/ad33385&amp;#34; &amp;#39;https://127.0.0.1:64081/api/v1/namespaces/myns&amp;#39;&#10;&lt;/span&gt;&lt;/span&gt;&lt;/code&gt;&lt;/pre&gt;&lt;/div&gt;&lt;p class="wp-block-paragraph"&gt;From there we can see the etcd query as the URI is namespaces/myns, which we use in etcdctl query path:&lt;/p&gt;&#10;&lt;div class="highlight"&gt;&lt;pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;-webkit-text-size-adjust:none;"&gt;&lt;code class="language-bash" data-lang="bash"&gt;&lt;span style="display:flex;"&gt;&lt;span&gt;etcdctl get /registry/namespaces/myns&#10;&lt;/span&gt;&lt;/span&gt;&lt;/code&gt;&lt;/pre&gt;&lt;/div&gt;&lt;p class="wp-block-paragraph"&gt;Every type of Kubernetes object has a storage.go file in their implementation that defines how api server should write object. &lt;a href="https://github.com/kubernetes/kubernetes/blob/master/pkg/registry/core/pod/storage/storage.go"&gt;Here&lt;/a&gt; is an example for Pod object.&lt;/p&gt;&#10;&lt;p class="wp-block-paragraph"&gt;Etcd also supports watch command to watch for changes. For example:&lt;/p&gt;&#10;&lt;div class="highlight"&gt;&lt;pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;-webkit-text-size-adjust:none;"&gt;&lt;code class="language-bash" data-lang="bash"&gt;&lt;span style="display:flex;"&gt;&lt;span&gt;etcdctl watch --prefix /registry/namespace &lt;span style="color:#75715e"&gt;# watch output k create ns newns&lt;/span&gt;&#10;&lt;/span&gt;&lt;/span&gt;&lt;/code&gt;&lt;/pre&gt;&lt;/div&gt;&lt;p class="wp-block-paragraph"&gt;Now we create a namespace with kubectl:&lt;/p&gt;&#10;&lt;div class="highlight"&gt;&lt;pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;-webkit-text-size-adjust:none;"&gt;&lt;code class="language-bash" data-lang="bash"&gt;&lt;span style="display:flex;"&gt;&lt;span&gt;kubectl create ns myns&#10;&lt;/span&gt;&lt;/span&gt;&lt;/code&gt;&lt;/pre&gt;&lt;/div&gt;&lt;p class="wp-block-paragraph"&gt;The output from etcdctl will reflect the change. The communication between etcdctl and etcd is gRPC protocol. The output is based on stream, as we can see from the watch result.&lt;/p&gt;&#10;&lt;h2 class="wp-block-heading" id="h-etcd-maintenance"&gt;Etcd Maintenance&lt;/h2&gt;&#10;&lt;p class="wp-block-paragraph"&gt;Like any distributed store, etcd needs &lt;a href="https://etcd.io/docs/v3.5/op-guide/maintenance/"&gt;maintenance&lt;/a&gt; and operation work. For example, we can check endpoint status with endpoint command:&lt;/p&gt;&#10;&lt;div class="highlight"&gt;&lt;pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;-webkit-text-size-adjust:none;"&gt;&lt;code class="language-bash" data-lang="bash"&gt;&lt;span style="display:flex;"&gt;&lt;span&gt;etcdctl endpoint status&#10;&lt;/span&gt;&lt;/span&gt;&lt;/code&gt;&lt;/pre&gt;&lt;/div&gt;&lt;p class="wp-block-paragraph"&gt;We can also backup and restore etcd store with etcdctl command:&lt;/p&gt;&#10;&lt;div class="highlight"&gt;&lt;pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;-webkit-text-size-adjust:none;"&gt;&lt;code class="language-bash" data-lang="bash"&gt;&lt;span style="display:flex;"&gt;&lt;span&gt;etcdctl snapshot save /tmp/backup.db&#10;&lt;/span&gt;&lt;/span&gt;&lt;/code&gt;&lt;/pre&gt;&lt;/div&gt;&lt;p class="wp-block-paragraph"&gt;This was an question in &lt;a href="https://static.digihunch.com/2021/04/preparing-certified-kubernetes-administrator-exam/"&gt;CKA exam&lt;/a&gt;. In real life, when the workload scales up, the etcd store may come across many pitfalls, such as degraded performance, unresponsiveness, some etcd member going down, network partition on etcd store causing split brain. It is important to ensure efficient communication between API server and etcd store. The etcdctl provides defrag and compact commands for common maintenance activities.&lt;/p&gt;&#10;&lt;nav class="wp-post-navigation" aria-label="Post navigation"&gt;&#10;&lt;a rel="prev" href="https://static.digihunch.com/2022/05/hosting-database-on-kubernetes/"&gt;&lt;span class="wp-post-navigation-label"&gt;Previous Post&lt;/span&gt;&lt;strong class="wp-post-navigation-title"&gt;Hosting database on Kubernetes&lt;/strong&gt;&lt;/a&gt;&#10;&lt;a rel="next" href="https://static.digihunch.com/2022/06/chaos-mesh-cloud-native-chaos-engineering/"&gt;&lt;span class="wp-post-navigation-label"&gt;Next Post&lt;/span&gt;&lt;strong class="wp-post-navigation-title"&gt;Chaos Mesh – Cloud Native Chaos Engineering&lt;/strong&gt;&lt;/a&gt;&#10;&lt;/nav&gt;&#10;</description></item><item><title>Intro to Big Data Projects</title><link>https://static.digihunch.com/2020/09/intro-to-big-data-projects/</link><pubDate>Thu, 10 Sep 2020 21:33:00 -0400</pubDate><guid>https://static.digihunch.com/2020/09/intro-to-big-data-projects/</guid><description>&lt;p class="wp-block-paragraph"&gt;Modern applications produce super large datasets beyond what traditional data-processing application can handle. Big data is a discipline that specialize in processing such data. For example, analysis, information extraction etc. The scale of large dataset grows well beyond the capacity of a single computer, which calls for computing power delivered by multi-node clustered systems. Intensive computing tasks are completed in a distributed system consisting multiple nodes each performing some tasks, known as High-Performance Computing Cluster (HPCC).&lt;/p&gt;&#10;&lt;p class="wp-block-paragraph"&gt;Cluster computing inherit the challenges of distributed system. Moreover, two main challenges to solve are: distributed storage, and distributed computation. In Apache Hadoop projects, HDFS and MapReduce address these two challenges respectively. Now the Hadoop ecosystem has evolved to include several core projects:&lt;/p&gt;&#10;&lt;h3 class="wp-block-heading"&gt;HDFS&lt;/h3&gt;&#10;&lt;p class="wp-block-paragraph"&gt;A distributed file system for reliably storing huge amount of unstructured, semi-structured or structured data in the form of files. Parts of a single large file can be stored on different nodes across the cluster. HDFS works in master-slave mode:&lt;/p&gt;&#10;&lt;ul class="wp-block-list"&gt;&lt;li&gt;NameNode (master): holds file system namespace, controls access, keep track of DataNodes and replication factor &lt;/li&gt;&lt;li&gt;DataNode (slave): stores user data&lt;/li&gt;&lt;/ul&gt;&#10;&lt;p class="wp-block-paragraph"&gt;HDFS is Java-based so is portable across all platforms. User interact with HDFS using a command-line interface called &amp;#8220;FS shell&amp;#8221;. There is also an interface called FUSE (filesystem in userspace) to mount HDFS to Linux OS. Since HDFS supports commodity hardware it is great for storing data for further processing. However, HDFS is not suitable for storing data related to applications requiring low latency access, nor is it good for simultaneous writes to the same file. Also HDFS is not suitable for large number of small files because the metadata for each file needs to be stored on the NameNode and is held in memory. &lt;a href="https://hadoop.apache.org/docs/stable1/hdfs_design.html"&gt;Here&lt;/a&gt; is the architecture guide for HDFS, and this &lt;a href="https://data-flair.training/blogs/hadoop-hdfs-data-read-and-write-operations"&gt;page&lt;/a&gt; expands further on the read and write operations in HDFS.&lt;/p&gt;&#10;&lt;p class="wp-block-paragraph"&gt;Compared to NAS(e.g. NFS), HDFS is distributed by design. The data blocks are distributed across different nodes. NFS storage may or may not be distributed depending on the implementation. HDFS is designed to work with MapReduce paradigm, where computation is moved to the data. In NAS, data is stored separately from the computations. Lastly, NAS is usually made up of enterprise grade hard drive but HDFS works with commodity hardware.&lt;/p&gt;&#10;&lt;h3 class="wp-block-heading"&gt;MapReduce&lt;/h3&gt;&#10;&lt;p class="wp-block-paragraph"&gt;Hadoop MapRecude is a distributed algorithm framework that allows parallel processing of huge amounts of data. It breaks a large chunk into smaller ones to be processed separately on different data nodes and automatically gather the results across the multiple nodes to return a single result. If the duration of linear data processing can be done during night hours, it makes sense to choose Hadoop MapReduce. MapReduce runs on Hadoop cluster but also supports other database formats like Cassandra and HBase. MapReduce includes:&lt;/p&gt;&#10;&lt;ul class="wp-block-list"&gt;&lt;li&gt;Job: a unit of work to be performed as requested by the client.&lt;/li&gt;&lt;li&gt;Task: Jobs are divided into sub-jobs known as tasks. The tasks can be run independent of each other on different nodes. There are two types of tasks: &lt;ul&gt;&lt;li&gt;Map task is performed by map() function to process one or more chunks of data and produce the output results&lt;/li&gt;&lt;li&gt;Reduce task is performed by reduce() function to consolidate the results produced by each of the map task&lt;/li&gt;&lt;/ul&gt;&lt;/li&gt;&lt;li&gt;JobTracker: like the storage (HDFS), the computation (MapReduce) also works in master-slave fashion. A JobTracker node acts as the master to schedule task on appropriate nodes, coordinate execution of tasks, get the result back after execution of each task, re-execute failed tasks, and monitor overall progress. There is only one JobTracker node per Hadoop Cluster.&lt;/li&gt;&lt;li&gt;TaskTracker: a TaskTracker node acts as teh slave and is responsible for executing a task assigned to it by the JobTracker. There are usually a number of JobTracker nodes in a Hadoop Cluster. They execute the heavy lifting tasks.&lt;/li&gt;&lt;li&gt;Data Locality: if MapReduce cannot place the data and the compute on the same node, data locality put the compute on the node nearest to the respective data node(s) which contains the data to be processed.&lt;/li&gt;&lt;/ul&gt;&#10;&lt;p class="wp-block-paragraph"&gt;The MapReduce programming model includes these steps: input-&amp;gt;split-&amp;gt;map-&amp;gt;combine-&amp;gt;shuffle&amp;amp;sort-&amp;gt;reduce-&amp;gt;output.&lt;/p&gt;&#10;&lt;figure class="wp-block-image"&gt;&lt;img decoding="async" src="https://ars.els-cdn.com/content/image/3-s2.0-B9780128093931000064-f06-04-9780128093931.jpg?_" alt=""/&gt;&lt;figcaption&gt;MapReduce programming model&lt;/figcaption&gt;&lt;/figure&gt;&#10;&lt;h3 class="wp-block-heading"&gt;YARN&lt;/h3&gt;&#10;&lt;p class="wp-block-paragraph"&gt;YARN (yet another resource negotiator) is a system to schedule applications and services on an HDFS cluster and manage the cluster resources like memory and CPU. The two components are:&lt;/p&gt;&#10;&lt;ul class="wp-block-list"&gt;&lt;li&gt;ResourceManager: receives the processing requests, and then passes the parts of requests to corresponding NodeManager accordingly based on the needs. ResourceManager is a central authority.&lt;/li&gt;&lt;li&gt;NodeManager: installed on every DataNode, is responsible for execution of the task on every single DataNode, monitoring the resource usage and reporting to the ResourceManager.&lt;/li&gt;&lt;/ul&gt;&#10;&lt;h3 class="wp-block-heading"&gt;HBase&lt;/h3&gt;&#10;&lt;p class="wp-block-paragraph"&gt;A key-value pair NoSQL database based on HDFS storage, with column family data representation, and mater-slave replication. HBase is based on Google&amp;#8217;s BigTable concept (similar to Cassandra). It runs on a cluster of commodity hardware and scales linearly. Compared with Cassandra, HBase doesn&amp;#8217;t have a query language of its own. You will have to work with JRuby-based shell, or Apache Hive. HBase is also a master-slave architecture and it uses Zookeeper as a status manager. In that sense, Cassandra is a &amp;#8220;self-sufficient&amp;#8221; database technology whereas HBase relies on other components in Hadoop. This &lt;a href="https://www.scnsoft.com/blog/cassandra-vs-hbase"&gt;article&lt;/a&gt; also compares the data model difference between the two.&lt;/p&gt;&#10;&lt;h3 class="wp-block-heading"&gt;Hive&lt;/h3&gt;&#10;&lt;p class="wp-block-paragraph"&gt;Hive is a SQL interface over MapReduce for developers and analysts who prefer SQL interface over native Java MapReduce programming to query and manage large datasets residing in HDFS. With Hive you can map a tabular structure on to data stored in distributed storage. The Hive queries are written in SQL-like language known as HiveQL, executed via MapReduce. When a HiveQL query is issued, it triggers a Map and/or Reduce job(s) to perform the operation defined in the query.&lt;/p&gt;&#10;&lt;h3 class="wp-block-heading"&gt;Pig&lt;/h3&gt;&#10;&lt;p class="wp-block-paragraph"&gt;A scripting interface over MapReduce for developers who prefer scripting interface over the native Java MapReduce programming. It is a runtime environment with a shell (named &lt;strong&gt;Grunt Shell&lt;/strong&gt;) for execution of MapReduce jobs via a high-level scripting language called Pig Latin. Pig is an abstraction (high-level programming language) on top of a Hadoop cluster. The Pig Latin query/command are complied into one or more MapReduce jobs and then executed on Hadoop cluster. The most common commands in Pig are:&lt;/p&gt;&#10;&lt;ul class="wp-block-list"&gt;&lt;li&gt;DUMP: displays the results to screen&lt;/li&gt;&lt;li&gt;STORE: stores the results to HDFS&lt;/li&gt;&lt;/ul&gt;&#10;&lt;figure class="wp-block-image"&gt;&lt;img decoding="async" src="https://2.bp.blogspot.com/-w7KeAnwWnBQ/WfYBJzgtvQI/AAAAAAAAAMk/D58SpZfK7lkJ8QnKnQZW268mKzRvuOOnACLcBGAs/s640/HadoopStack.png" alt="Apache Hadoop Ecosystem"/&gt;&lt;figcaption&gt;Hadoop Ecosystem&lt;/figcaption&gt;&lt;/figure&gt;&#10;&lt;p class="wp-block-paragraph"&gt;There are some other Apache projects, which are sometimes considered as in the Hadoop ecosystem as well:&lt;/p&gt;&#10;&lt;ul class="wp-block-list"&gt;&lt;li&gt;&lt;strong&gt;Oozie&lt;/strong&gt;: worflow scheduling system to manage Hadoop jobs. In Oozie, a workflow is defined as a collection of control flow nodes and action nodes in a directed acyclic graph. Control flow nodes define the beginning and the end of a workflow, as well as a mechanism to control the workflow execution path. Action nodes are the mechanism by which a workkflow triggers the execution of a computation/processing task, such as MapReduce, Pig, etc.&lt;/li&gt;&lt;li&gt;&lt;strong&gt;Sqoop&lt;/strong&gt; (SQL-to-Hadoop): a command-line interpreter tool for importing data from database (e.g. MySQL, data warehouse, etc) into the Hadoop environment (e.g. HDFS, Hive). It can also export the data back.&lt;/li&gt;&lt;li&gt;&lt;strong&gt;Flume&lt;/strong&gt;: data ingestion for streaming logs into Hadoop environment. Flume is a distributed and reliable service for collecting and aggregating huge amounts of log data.&lt;/li&gt;&lt;li&gt;&lt;strong&gt;ZooKeeper&lt;/strong&gt;: distributed service coordinator, as previously &lt;a href="https://static.digihunch.com/2020/08/zookeeper/"&gt;discussed&lt;/a&gt;. It is based on a Paxos algorithm variant called ZAB protocol.&lt;/li&gt;&lt;li&gt;&lt;strong&gt;Ambari&lt;/strong&gt;: a framework for provisioning, managing and monitoring Hadoop clusters.&lt;/li&gt;&lt;/ul&gt;&#10;&lt;p class="wp-block-paragraph"&gt;Hortonworks &lt;a href="https://www.cloudera.com/downloads/hortonworks-sandbox.html"&gt;sandbox&lt;/a&gt; provide a VM image that have some Hadoop services pre-installed for beginners to get a taste of how it works all together.&lt;/p&gt;&#10;&lt;h3 class="wp-block-heading"&gt;Spark&lt;/h3&gt;&#10;&lt;p class="wp-block-paragraph"&gt;Hadoop is used in the industry owing to a simple programming model (MapReduce) but the speed and waiting time (between queries and running the program). Spark is introduced to speed up the computing process. Spark uses Hadoop for storage (HDFS) and processing. It extends the MapReduce model to efficiently use more types of computations which includes interactive queries and stream processing. &lt;/p&gt;&#10;&lt;p class="wp-block-paragraph"&gt;Spark started as a sub-project of Hadoop in 2009 but since 2014 Apache has run it as a top-level project. It is a lightning-fast in-memory cluster computing technology. The features are:&lt;/p&gt;&#10;&lt;ul class="wp-block-list"&gt;&lt;li&gt;Speed: in-memory computing makes super fast processing;&lt;/li&gt;&lt;li&gt;Built-in APIs supports multiple languages: Scala, Python and Java;&lt;/li&gt;&lt;li&gt;Advanced analytics &amp;#8211; apart from map and reduce, Spark also has libraries that supports SQL query, near real-time stream processing, Graph algorithms and machine learning.&lt;/li&gt;&lt;/ul&gt;&#10;&lt;p class="wp-block-paragraph"&gt;Spark can run in &lt;a href="https://spark.apache.org/docs/latest/spark-standalone.html"&gt;standalone mode&lt;/a&gt;, on &lt;a href="https://spark.apache.org/docs/latest/running-on-mesos.html"&gt;Mesos&lt;/a&gt;, or with &lt;a href="https://spark.apache.org/docs/latest/running-on-yarn.html"&gt;YARN cluster manager&lt;/a&gt;. The document also provides guide on deployment on EC2 and &lt;a href="https://spark.apache.org/docs/latest/running-on-kubernetes.html"&gt;Kubernetes&lt;/a&gt;. Spark contains these components:&lt;/p&gt;&#10;&lt;ul class="wp-block-list"&gt;&lt;li&gt;Spark Core: the underlying general execution engine for spakr platform that all other functionality is built upon. It provides in-memory computing and referencing datasets in external storage systems.&lt;/li&gt;&lt;li&gt;SparkSQL: a components on top of Spark Core that introduces a new data abstraction called SchemaRDD, which supports both structured and semi-structured data.&lt;/li&gt;&lt;li&gt;Spark Streaming: perform streaming analytics on top of Spark Core. It ingests data in mini-batches and performs RDD (Resilient Distributed Datasets) transformation on the fly.&lt;/li&gt;&lt;li&gt;MLib: a distributed machine learning framework &lt;/li&gt;&lt;li&gt;GraphX: a distributed graph-processing framework&lt;/li&gt;&lt;/ul&gt;&#10;&lt;p class="wp-block-paragraph"&gt;The speed of Spark is owing to its fundamental data structure &amp;#8211; Resilient Distributed Datasets (RDD), an immutable distributed collection of objects. Each dataset in RDD (object collection) is divided into logical partitions, which can be computed on different nodes of the cluster. The object can be any type of Python, Java or Scala object, including user-defined classes. There are two ways to create RDDS:&lt;/p&gt;&#10;&lt;ul class="wp-block-list"&gt;&lt;li&gt;Parallelizing an existing collection in your driver program&lt;/li&gt;&lt;li&gt;Referencing a dataset from external storage system (e.g. HDFS, HBase) or data source offering a Hadoop Input Format&lt;/li&gt;&lt;/ul&gt;&#10;&lt;p class="wp-block-paragraph"&gt;You can also create RDD based on other existing RDDs. This &lt;a href="https://www.tutorialspoint.com/apache_spark/apache_spark_rdd.htm"&gt;page&lt;/a&gt; explains further how RDD speeds up computing compared to MapReduce.&lt;/p&gt;&#10;&lt;nav class="wp-post-navigation" aria-label="Post navigation"&gt;&#10;&lt;a rel="prev" href="https://static.digihunch.com/2020/09/host-legacy-application-with-docker-compose/"&gt;&lt;span class="wp-post-navigation-label"&gt;Previous Post&lt;/span&gt;&lt;strong class="wp-post-navigation-title"&gt;Host legacy application in Docker 1 of 2&lt;/strong&gt;&lt;/a&gt;&#10;&lt;a rel="next" href="https://static.digihunch.com/2020/09/spark-cassandra-and-python/"&gt;&lt;span class="wp-post-navigation-label"&gt;Next Post&lt;/span&gt;&lt;strong class="wp-post-navigation-title"&gt;Spark, Cassandra and Python&lt;/strong&gt;&lt;/a&gt;&#10;&lt;/nav&gt;&#10;</description></item><item><title>Zookeeper Summary</title><link>https://static.digihunch.com/2020/08/zookeeper/</link><pubDate>Wed, 26 Aug 2020 23:10:00 -0400</pubDate><guid>https://static.digihunch.com/2020/08/zookeeper/</guid><description>&lt;h3 class="wp-block-heading" id="h-distributed-systems"&gt;Distributed systems&lt;/h3&gt;&#10;&lt;p class="wp-block-paragraph"&gt;Distributed system involves &lt;span style="text-decoration: underline;"&gt;independent computing entities&lt;/span&gt; linked together by network. The components &lt;span style="text-decoration: underline;"&gt;communicate and coordinate&lt;/span&gt; with each other to achieve a &lt;span style="text-decoration: underline;"&gt;common goal&lt;/span&gt;. In early days, designers and developers often had made some assumptions (aka. fallacies) of distributed computing:&lt;/p&gt;&#10;&lt;ul class="wp-block-list"&gt;&#10;&lt;li&gt;The network is reliable&lt;/li&gt;&#10;&lt;li&gt;Latency is zero&lt;/li&gt;&#10;&lt;li&gt;Bandwidth is infinite&lt;/li&gt;&#10;&lt;li&gt;Network is secure&lt;/li&gt;&#10;&lt;li&gt;Topology doesn&amp;#8217;t change: in reality, components to a network get removed/added over time. the system should tolerate such changes.&lt;/li&gt;&#10;&lt;li&gt;There is one administrator: for distributed systems to function, they interact with external system beyond administrative control.&lt;/li&gt;&#10;&lt;li&gt;Transport cost is zero:&amp;nbsp; cost is involved everywhere, in the form of CPU cycles spent, to actual dollars paid to service provider.&lt;/li&gt;&#10;&lt;li&gt;Network is homogenous&lt;/li&gt;&#10;&lt;/ul&gt;&#10;&lt;p class="wp-block-paragraph"&gt;These fallacies make coordinating distributed computing entities a huge challenge and Zookeeper is introduced to address these challenges. Zookeeper implements common tasks for distributed coordination, such as:&lt;/p&gt;&#10;&lt;ul class="wp-block-list"&gt;&#10;&lt;li&gt;Configuration Management (propagate configuration changes to all worker nodes dynamically)&lt;/li&gt;&#10;&lt;li&gt;Naming service&amp;nbsp;&lt;/li&gt;&#10;&lt;li&gt;Distributed synchronization (locks and barriers)&lt;/li&gt;&#10;&lt;li&gt;Cluster membership operations (e.g. detection of node leave/join)&lt;/li&gt;&#10;&lt;/ul&gt;&#10;&lt;p class="wp-block-paragraph"&gt;ZooKeeper is a centralized coordination service for the distributed application. ZooKeeper itself is distributed as well. It runs on its own cluster of servers called a ZooKeeper ensemble, separate from application&amp;#8217;s cluster. Distributed consensus, group management, presence protocols, and leader election are implemented by the service so that the application developers do not need to reinvent the wheel by implementing them on their own.&lt;/p&gt;&#10;&lt;figure class="wp-block-image"&gt;&lt;img decoding="async" src="https://zookeeper.apache.org/doc/r3.6.1/images/zkservice.jpg" alt="ZooKeeper Service"/&gt;&lt;/figure&gt;&#10;&lt;p class="wp-block-paragraph"&gt;Developers will have to use APIs through ZooKeeper&amp;#8217;s client library, which has language bindings for almost all popular programming languages. The client library is responsible for the interactions of an application with the ZooKeeper service. For testing with API access one can alternatively use its Java-based command-line shell (zkCli.sh)&lt;/p&gt;&#10;&lt;div class="highlight"&gt;&lt;pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;-webkit-text-size-adjust:none;"&gt;&lt;code class="language-bash" data-lang="bash"&gt;&lt;span style="display:flex;"&gt;&lt;span&gt;$ zkCli.sh -server zknode:2181&#10;&lt;/span&gt;&lt;/span&gt;&lt;/code&gt;&lt;/pre&gt;&lt;/div&gt;&lt;h3 class="wp-block-heading" id="h-how-zookeeper-works"&gt;How Zookeeper works&lt;/h3&gt;&#10;&lt;h4 class="wp-block-heading" id="h-data-model"&gt;Data Model&lt;/h4&gt;&#10;&lt;p class="wp-block-paragraph"&gt;ZooKeeper allows distributed process to coordinate with each other through a shared hierarchical namespace of data registers (znodes). The hierarchy start with root node which has child znode(s). Each znode can have their children, as well as store its own data (hence the name data register). The data in a znode is stored in byte format for a maximum of 1MB (ZooKeeper by design is just a coordinator service of host application, so its own data set size is fairly small).&lt;/p&gt;&#10;&lt;figure class="wp-block-image size-full"&gt;&lt;img loading="lazy" decoding="async" width="360" height="368" src="https://static.digihunch.com/wp-content/uploads/2023/01/zkdm.jpeg" alt="" class="wp-image-7753" srcset="https://static.digihunch.com/wp-content/uploads/2023/01/zkdm.jpeg 360w, https://static.digihunch.com/wp-content/uploads/2023/01/zkdm-293x300.jpeg 293w" sizes="auto, (max-width: 360px) 100vw, 360px" /&gt;&lt;figcaption class="wp-element-caption"&gt;Zookeeper data model&lt;/figcaption&gt;&lt;/figure&gt;&#10;&lt;p class="wp-block-paragraph"&gt;Znodes have two types (set at time of creation) &lt;/p&gt;&#10;&lt;ul class="wp-block-list"&gt;&#10;&lt;li&gt;persistent znode: for storing persistent data, such as configuration. The znodes and their data will exist even if the creator client dies.&lt;/li&gt;&#10;&lt;li&gt;ephemeral znode: deleted by ZooKeeper service when the creating client&amp;#8217;s session ends (due to disconnection or explicit termination). It can also be explicitly deleted by creator client through delete API call. They cannot have children. Their visibility is controlled by ACL policy&lt;/li&gt;&#10;&lt;/ul&gt;&#10;&lt;p class="wp-block-paragraph"&gt;ZooKeeper can assign an incremental sequence number as part of znode name during its creation. This makes a sequential node. Both persistent znode and ephemeral znode can be either sequential or not.&lt;/p&gt;&#10;&lt;p class="wp-block-paragraph"&gt;In typical client-server architecture, server is passively open and do not initiate communication to client. Client pulls information from server. This is however an anti-pattern for large scale distributed system. ZooKeeper implements a Watch mechanism where clients can get notifications from ZooKeeper service, instead of having to poll for events. Clients can register with the ZooKeeper service (by setting a watch on znode) for any changes associated with a znode. A watch will only trigger notification once, and needs to be re-registered (by client) for trigger the next notification. A watch is triggered upon:&lt;/p&gt;&#10;&lt;ul class="wp-block-list"&gt;&#10;&lt;li&gt;Any changes to the data of a znode;&lt;/li&gt;&#10;&lt;li&gt;any changes to the children of a znode;&lt;/li&gt;&#10;&lt;li&gt;Creation of deletion of a znode&lt;/li&gt;&#10;&lt;/ul&gt;&#10;&lt;p class="wp-block-paragraph"&gt;ZooKeeper guarantees that notifications are delivered in the order of event occurrence. When a client disconnects from ZooKeeper server, it doesn&amp;#8217;t receive any watches until the connection is re-established. &lt;/p&gt;&#10;&lt;h4 class="wp-block-heading" id="h-api-operations"&gt;API Operations&lt;/h4&gt;&#10;&lt;p class="wp-block-paragraph"&gt;The ZooKeeper operations are:&lt;/p&gt;&#10;&lt;figure class="wp-block-table is-style-regular"&gt;&lt;table class="has-background" style="background-color:#e9fbe5"&gt;&lt;tbody&gt;&lt;tr&gt;&lt;td&gt;Operation&lt;/td&gt;&lt;td&gt;Description&lt;/td&gt;&lt;/tr&gt;&lt;tr&gt;&lt;td&gt;create&lt;/td&gt;&lt;td&gt;Creates a znode in the specified path&lt;/td&gt;&lt;/tr&gt;&lt;tr&gt;&lt;td&gt;delete&lt;/td&gt;&lt;td&gt;Deletes a znodes from the specified path. Not allowed if the znode has children. version number required&lt;/td&gt;&lt;/tr&gt;&lt;tr&gt;&lt;td&gt;exists&lt;/td&gt;&lt;td&gt;Check if a znode at the specified path exists, and get version number; support watch&lt;/td&gt;&lt;/tr&gt;&lt;tr&gt;&lt;td&gt;getChildren&lt;/td&gt;&lt;td&gt;Get a list of children of a znode; support watch&lt;/td&gt;&lt;/tr&gt;&lt;tr&gt;&lt;td&gt;getData&lt;/td&gt;&lt;td&gt;get the data associated with a znode; support watch&lt;/td&gt;&lt;/tr&gt;&lt;tr&gt;&lt;td&gt;setData&lt;/td&gt;&lt;td&gt;writes data into the data field of a znode. Version number required.&lt;/td&gt;&lt;/tr&gt;&lt;tr&gt;&lt;td&gt;getACL&lt;/td&gt;&lt;td&gt;get the ACL of a znode&lt;/td&gt;&lt;/tr&gt;&lt;tr&gt;&lt;td&gt;setACL&lt;/td&gt;&lt;td&gt;set the ACL in a znode&lt;/td&gt;&lt;/tr&gt;&lt;tr&gt;&lt;td&gt;sync&lt;/td&gt;&lt;td&gt;synchronizes a client&amp;#8217;s view of a znode &lt;/td&gt;&lt;/tr&gt;&lt;/tbody&gt;&lt;/table&gt;&lt;/figure&gt;&#10;&lt;p class="wp-block-paragraph"&gt;The write operations (setData, create, delete) are atomic, durable and eventually consistent. Every znode has a stat structure including cZxid, mZxid an dpZxid that keeps track of the ID of the transactions that created, last modified this znode, or pertains to adding or removing its children.&lt;/p&gt;&#10;&lt;p class="wp-block-paragraph"&gt;Production znode ensemble with more than one node is running in quorum mode. Updates to ZooKeeper tree by clients must be persistently stored in this quorum of nodes for a transaction to be completed successfully. Odd number of node is recommended to avoid split-brain where network partition causes two subsets of servers in the ensemble function independently, and different clients get different results for the same requests, depending upon the server they are connected to.&lt;/p&gt;&#10;&lt;p class="wp-block-paragraph"&gt;All ZooKeeper nodes are listed in the configuration for client application to randomly pick from and try to connect and establish a session. The session is associated with every operation the client executes in a ZooKeeper service. The session also has a timeout period specified by the application client during session establishment. If the connection remains idle for more than the timeout period, the server expires the session. Appropriate session timeout should be set based on network condition. Sessions are kept alive by client sending heartbeat to ZooKeeper service. Application developer needs to handle connection-loss scenarios properly.&lt;/p&gt;&#10;&lt;h4 class="wp-block-heading" id="h-leader-election-and-atomic-broadcast"&gt;Leader Election and Atomic Broadcast&lt;/h4&gt;&#10;&lt;p class="wp-block-paragraph"&gt;ZooKeeper ensemble contains a leader nodes, follower nodes and observer nodes.&lt;/p&gt;&#10;&lt;ul class="wp-block-list"&gt;&#10;&lt;li&gt;The leader node is elected by the cluster. It handles all write requests. &lt;/li&gt;&#10;&lt;li&gt;The follower nodes are leader candidates that are not elected. They are backup to the leader nodes. They handle read request, and receive the updates proposed by the leader, and through a majority consensus mechanism, a consistent state is maintained across the ensemble. &lt;/li&gt;&#10;&lt;li&gt;The observer nodes are ineligible as leader candidates. They have otherwise the same function as followers.&lt;/li&gt;&#10;&lt;/ul&gt;&#10;&lt;p class="wp-block-paragraph"&gt;The service relies on the replication mechanism to ensure that all updates are persistent in all servers that constitute the ensemble. This is the core mechanism in ZooKeeper, implemented as a special atomic messaging protocol called ZooKeeper Atomic Broadcast (ZAB). ZAB (a variant of Paxos algorithm) ensures the election of new leader in the event of old leader crash, and ensures integrity of data. It defines three states (looking, following and leading) of a node, and goes through four phases (election, discovery, sync, broadcast) in its operation.&lt;/p&gt;&#10;&lt;p class="wp-block-paragraph"&gt;All read requests (exists, getData, getChildren) are process locally by the ZooKeeper node where the client is connected to. This makes read operation fast. All write requests (create, delete, and setData) are forwarded to the leader in the ensemble, which carries out the client request as a transaction. A transaction is identified by zxid and is idempotent. Transaction also satisfies the property of isolation (no transaction is interfered with by any other transaction). Only after a majority of the followers acknowledge that they have persisted the change does the leader commit the update.&lt;/p&gt;&#10;&lt;figure class="wp-block-image"&gt;&lt;img decoding="async" src="https://zookeeper.apache.org/doc/r3.6.1/images/zkcomponents.jpg" alt="ZooKeeper Components"/&gt;&lt;/figure&gt;&#10;&lt;p class="wp-block-paragraph"&gt;Transaction processing involves two steps in ZooKeeper: leader election and atomic broadcast. This resembles a two-phase commit protocol (which also includes a leader election and an atomic broadcast)&lt;/p&gt;&#10;&lt;p class="wp-block-paragraph"&gt;ZooKeeper use local storage to persist transactions. The transactions are logged to transaction logs, in sync&amp;#8217;ed write, requiring a dedicated block device separated from boot device of server. The local storage also keep point-in-time copies (snapshots) of the ZooKeeper tree.&lt;/p&gt;&#10;&lt;h3 class="wp-block-heading" id="h-zookeeper-recipes"&gt;ZooKeeper Recipes&lt;/h3&gt;&#10;&lt;p class="wp-block-paragraph"&gt;The ZooKeeper recipes defines high-level implementation (construct) of some common distributed coordination mechanism:&lt;/p&gt;&#10;&lt;ul class="wp-block-list"&gt;&#10;&lt;li&gt;&lt;a href="https://en.wikipedia.org/wiki/Barrier_(computer_science)"&gt;Barrier&lt;/a&gt;: any thread/process must stop at this point and cannot proceed until all other threads/processes reach this barrier.&lt;/li&gt;&#10;&lt;li&gt;&lt;a href="https://computersciencewiki.org/index.php/Queue"&gt;Queue&lt;/a&gt;: allow FIFO in distributed system&lt;/li&gt;&#10;&lt;li&gt;&lt;a href="https://en.wikipedia.org/wiki/Lock_(computer_science)"&gt;Lock&lt;/a&gt;: Fully distributed locks that are globally synchronous, meaning at any snapshot in time no two clients think they hold the same lock.&lt;/li&gt;&#10;&lt;li&gt;&lt;a href="https://en.wikipedia.org/wiki/Leader_election"&gt;Leader Election&lt;/a&gt;: designate a single process as the organizer of some task distributed among several nodes.&lt;/li&gt;&#10;&lt;li&gt;Group membership: node may join or leave a group, which needs to be made available to clients. An alternative to ZooKeeper to manage group membership is &lt;a href="https://en.wikipedia.org/wiki/Gossip_protocol"&gt;gossip protocol&lt;/a&gt;.&lt;/li&gt;&#10;&lt;li&gt;&lt;a href="http://jasonwilder.com/blog/2014/02/04/service-discovery-in-the-cloud/"&gt;Service discovery&lt;/a&gt;: help client to determine IP and port for a service that are hosted by multiple servers.&lt;/li&gt;&#10;&lt;li&gt;&lt;a href="https://en.wikipedia.org/wiki/Two-phase_commit_protocol"&gt;Two-phase commit&lt;/a&gt;: a mechanism for atomic commitment in two steps: first a commit request phase involving a voting by participants; and second, either a commit action, or an abort action, based on the voting result.&lt;/li&gt;&#10;&lt;/ul&gt;&#10;&lt;h3 class="wp-block-heading" id="h-zookeeper-administration"&gt;Zookeeper Administration&lt;/h3&gt;&#10;&lt;p class="wp-block-paragraph"&gt;The official &lt;a href="https://zookeeper.apache.org/doc/r3.6.1/zookeeperAdmin.html"&gt;documentation&lt;/a&gt; includes all we need to know about administration. In addition, we need to configure &lt;a href="https://logging.apache.org/log4j/1.2/manual.html"&gt;log4j&lt;/a&gt; for proper logging. As best practices, we also should turn off &lt;a href="https://static.digihunch.com/2018/04/centos-remove-swap-safely/"&gt;swapping&lt;/a&gt; on ZooKeeper. We should clean up the data directory periodically if auto purge is not enabled. For optimal performance, ZooKeeper transaction log should be configured in a dedicated device.&lt;/p&gt;&#10;&lt;p class="wp-block-paragraph"&gt;For monitoring, ZooKeeper responds to a small sets of four-letter commands issued through telnet or nc to server&amp;#8217;s client port. This allows the admin to check health of server or diagnose any problems. This requires the following property in zoo keeper config:&lt;/p&gt;&#10;&lt;div class="highlight"&gt;&lt;pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;-webkit-text-size-adjust:none;"&gt;&lt;code class="language-text" data-lang="text"&gt;&lt;span style="display:flex;"&gt;&lt;span&gt;4lw.commands.whitelist=stat, ruok, conf, isro, wchc&#10;&lt;/span&gt;&lt;/span&gt;&lt;/code&gt;&lt;/pre&gt;&lt;/div&gt;&lt;p class="wp-block-paragraph"&gt;The value can be set to asterick to allow all four-letter keyword. Once enabled, we can check server status&lt;/p&gt;&#10;&lt;div class="highlight"&gt;&lt;pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;-webkit-text-size-adjust:none;"&gt;&lt;code class="language-bash" data-lang="bash"&gt;&lt;span style="display:flex;"&gt;&lt;span&gt;$ echo ruok | nc localhost &lt;span style="color:#ae81ff"&gt;2181&lt;/span&gt;&#10;&lt;/span&gt;&lt;/span&gt;&lt;span style="display:flex;"&gt;&lt;span&gt;imok&#10;&lt;/span&gt;&lt;/span&gt;&lt;/code&gt;&lt;/pre&gt;&lt;/div&gt;&lt;p class="wp-block-paragraph"&gt;More four-letter commands are listed &lt;a href="https://zookeeper.apache.org/doc/r3.1.2/zookeeperAdmin.html#sc_zkCommands"&gt;here&lt;/a&gt;. Apart from the four-letter commands, ZooKeeper can also be managed through Java Management Extensions (&lt;a href="https://www.oracle.com/java/technologies/javase/javamanagement.html"&gt;JMX&lt;/a&gt;).&lt;/p&gt;&#10;&lt;h3 class="wp-block-heading" id="h-conclusion"&gt;Conclusion&lt;/h3&gt;&#10;&lt;p class="wp-block-paragraph"&gt;Apache ZooKeeper is a coordination service for distributed application. It has become the solution for high availability for many other projects. Some of Apache&amp;#8217;s well known open-source distributed services include:&lt;/p&gt;&#10;&lt;ul class="wp-block-list"&gt;&#10;&lt;li&gt;Apache Hadoop (an umbrella of projects including many components for BigData processing such as Hadoop Common, Hadoop Distributed File System (HDFS), Hadoop YARN (yet another resource negotiator) and Hadoop MapReduce)&lt;/li&gt;&#10;&lt;li&gt;Apache HBase: non-relational database on top of HDFS&lt;/li&gt;&#10;&lt;li&gt;Apache Hive: data warehouse with SQL-like interface&lt;/li&gt;&#10;&lt;li&gt;Apache Kafka: stream processing&lt;/li&gt;&#10;&lt;li&gt;Apache Nifi: automated data flow processing. &lt;/li&gt;&#10;&lt;/ul&gt;&#10;&lt;p class="wp-block-paragraph"&gt;Some of them, such as Nifi, has an embedded implementation of ZooKeeper ensemble if there isn&amp;#8217;t a separate ensemble. There is some limitation with embedded Zookeeper ensemble. First, we cannot start ZooKeeper without starting Nifi service on the same server. Second, we need to orchestrate the configuration so that the ZooKeeper ensemble does not grow too large. We need to keep in mind that the ZooKeeper ensemble is a separate cluster of its own, and the it is not recommended to have more than 7 nodes on ZooKeeper.&lt;/p&gt;&#10;&lt;nav class="wp-post-navigation" aria-label="Post navigation"&gt;&#10;&lt;a rel="prev" href="https://static.digihunch.com/2020/08/virtualization-4-of-4-networking/"&gt;&lt;span class="wp-post-navigation-label"&gt;Previous Post&lt;/span&gt;&lt;strong class="wp-post-navigation-title"&gt;Virtualization 4 of 4 – Networking&lt;/strong&gt;&lt;/a&gt;&#10;&lt;a rel="next" href="https://static.digihunch.com/2020/09/host-legacy-application-with-docker-compose/"&gt;&lt;span class="wp-post-navigation-label"&gt;Next Post&lt;/span&gt;&lt;strong class="wp-post-navigation-title"&gt;Host legacy application in Docker 1 of 2&lt;/strong&gt;&lt;/a&gt;&#10;&lt;/nav&gt;&#10;</description></item><item><title>Kafka high-level Overview</title><link>https://static.digihunch.com/2020/07/zookeeper-and-kafka-overview/</link><pubDate>Tue, 21 Jul 2020 23:19:00 -0400</pubDate><guid>https://static.digihunch.com/2020/07/zookeeper-and-kafka-overview/</guid><description>&lt;h3 class="wp-block-heading" id="h-zookeeper"&gt;Zookeeper&lt;/h3&gt;&#10;&lt;p class="wp-block-paragraph"&gt;General definition of distributed system: a software system that is composed of &lt;strong&gt;independent &lt;/strong&gt;computing entities linked &lt;strong&gt;together &lt;/strong&gt;by a computer network whose components communicate and coordinate with each other to achieve a common computational goal. Implementing coordination among components of a distributed system is hard. For example, designated master node becomes single point of failure; cluster needs to detect availability of new nodes as it joins cluster.&lt;/p&gt;&#10;&lt;p class="wp-block-paragraph"&gt;Zookeeper is designed to &lt;strong&gt;simplify cluster coordination&lt;/strong&gt;. Zookeeper implements key aspects in cluster coordination, such as distributed consensus, group management, presence protocols and leader election. In order to coordinate a cluster, zookeeper itself also runs in its own cluster, called &lt;strong&gt;ensemble&lt;/strong&gt;. Zookeeper exposes a simple but powerful interface of primitives. Applications can be designed on these primitives implemented through ZooKeeper APIs to solve the problems of distributed synchronization, cluster configuration management, group membership, etc.&lt;/p&gt;&#10;&lt;figure class="wp-block-image"&gt;&lt;img decoding="async" src="https://zookeeper.apache.org/doc/r3.4.6/images/zkservice.jpg" alt=""/&gt;&lt;figcaption class="wp-element-caption"&gt;Zookeeper Ensemble&lt;/figcaption&gt;&lt;/figure&gt;&#10;&lt;p class="wp-block-paragraph"&gt;Clients can connect to a Zookeeper service by connecting to any member of the ensemble. The members of the ensemble are aware of each other&amp;#8217;s state. As long as a majority of the nodes are available, the service will be available. &lt;strong&gt;Zookeeper cli (zkCli.sh)&lt;/strong&gt; can be used to connect to Zookeeper server. they can be downloaded from &lt;a href="https://zookeeper.apache.org/releases.html"&gt;here&lt;/a&gt;.&lt;/p&gt;&#10;&lt;p class="wp-block-paragraph"&gt;Zookeeper is integrated with many other services apart from Kafka, such as Nifi and Hadoop.&lt;/p&gt;&#10;&lt;h3 class="wp-block-heading" id="h-kafka"&gt;&lt;strong&gt;Kafka&lt;/strong&gt;&lt;/h3&gt;&#10;&lt;p class="wp-block-paragraph"&gt;&lt;a href="https://kafka.apache.org/"&gt;Kafka &lt;/a&gt;is a messaging system that is horizontally scalable, fault tolerant. It can also serve as queue storage system and stream processing system. It is distributed and use Zookeeper for cluster coordination. Each node is called a broker.&lt;/p&gt;&#10;&lt;figure class="wp-block-image"&gt;&lt;img decoding="async" src="https://kafka.apache.org/25/images/log_anatomy.png" alt=""/&gt;&lt;/figure&gt;&#10;&lt;p class="wp-block-paragraph"&gt;&lt;strong&gt;Topics &lt;/strong&gt;in Kafka (think of table in database) is a category or feed name to which messages (records) are published. Topic is broken up into ordered commit logs called partitions. Each partition has an ID. Each message in a partition is assigned an offset. Topics that are created in Kafka are distributed across brokers based on the partition, replication, and other factors. Each partition is replicated across several brokers depending on replication factor. For each partition, Kafka elect one replica as the leader of partition.&lt;/p&gt;&#10;&lt;p class="wp-block-paragraph"&gt;Writes to a partition is generally sequential. Reading messages can either be from the beginning, or rewind or skip to any port in partition given an offset value. Data in a topic is retained for a configurable period of time. &lt;/p&gt;&#10;&lt;p class="wp-block-paragraph"&gt;A &lt;strong&gt;message &lt;/strong&gt;is a unit of data in Kafka, in the format of key-value pair. A key is used to control the message that is to be written to partitions. Messages with the same keys are always written to the same partition (hash map)&lt;/p&gt;&#10;&lt;p class="wp-block-paragraph"&gt;A &lt;strong&gt;producer &lt;/strong&gt;publishes new message to a topic. Producers do not care which partition the message is written to and will balance messages over every partition of a topic evenly. Directing messages to a partition is done using the message key and a partitioner, this will generate a hash of the key and map it to a partition.&lt;/p&gt;&#10;&lt;figure class="wp-block-image is-resized"&gt;&lt;img loading="lazy" decoding="async" src="https://kafka.apache.org/25/images/log_consumer.png" alt="" width="370" height="225"/&gt;&lt;/figure&gt;&#10;&lt;p class="wp-block-paragraph"&gt;A &lt;strong&gt;consumer &lt;/strong&gt;is subscribed to one or more topics and read messages sequentially. The consumer keeps track of messages it has consumed by keeping track on the offset of the message. The offset is a bit of metadata (an integer value that continually increases) that kafka adds to each message. Each partition has a unique offset which is stored with the offset of the last consumed message. A consumer can stop and start without losing its current state.&lt;/p&gt;&#10;&lt;p class="wp-block-paragraph"&gt;A Kafka &lt;strong&gt;broker &lt;/strong&gt;is designed to operate as part of a cluster. One broker in the cluster also function as the cluster&amp;#8217;s controller, which is responsible for administrative operations such as: assigning partitions to brokers; monitoring for broker failures in cluster. A particular partition is owned by a broker and that broker is called the leader of the partition.&lt;/p&gt;&#10;&lt;p class="wp-block-paragraph"&gt;All consumers and producers operating on that partition must connect to the leader.&lt;/p&gt;&#10;&lt;p class="wp-block-paragraph"&gt;Kafka cluster may replicate across cluster using MirrorMaker.&lt;/p&gt;&#10;&lt;p class="wp-block-paragraph"&gt;Reference: &lt;strong&gt;Kafka: The Definitive Guide: Real-Time Data and Stream Processing at Scale&lt;/strong&gt;&lt;/p&gt;&#10;&lt;figure class="wp-block-image size-large is-resized"&gt;&lt;img loading="lazy" decoding="async" src="https://static.digihunch.com/wp-content/uploads/2023/01/kafka-780x1024.jpeg" alt="" class="wp-image-7913" width="207" height="272" srcset="https://static.digihunch.com/wp-content/uploads/2023/01/kafka-780x1024.jpeg 780w, https://static.digihunch.com/wp-content/uploads/2023/01/kafka-229x300.jpeg 229w, https://static.digihunch.com/wp-content/uploads/2023/01/kafka-768x1008.jpeg 768w, https://static.digihunch.com/wp-content/uploads/2023/01/kafka.jpeg 1036w" sizes="auto, (max-width: 207px) 100vw, 207px" /&gt;&lt;/figure&gt;&#10;&lt;p class="wp-block-paragraph"&gt; &lt;/p&gt;&#10;&lt;nav class="wp-post-navigation" aria-label="Post navigation"&gt;&#10;&lt;a rel="prev" href="https://static.digihunch.com/2020/07/nfs-network-file-system-and-rpc-remote-procedure-call/"&gt;&lt;span class="wp-post-navigation-label"&gt;Previous Post&lt;/span&gt;&lt;strong class="wp-post-navigation-title"&gt;How RPC and NFS work&lt;/strong&gt;&lt;/a&gt;&#10;&lt;a rel="next" href="https://static.digihunch.com/2020/07/overview-of-virtualization/"&gt;&lt;span class="wp-post-navigation-label"&gt;Next Post&lt;/span&gt;&lt;strong class="wp-post-navigation-title"&gt;Virtualization 1 of 4 – Hypervisor&lt;/strong&gt;&lt;/a&gt;&#10;&lt;/nav&gt;&#10;</description></item></channel></rss>