RADOS on Digi Hunch

Kubernetes Storage on Azure 3 of 3 – Ceph by Rook

Fri, 26 Aug 2022 19:43:00 -0400

In the last two posts, I covered the native storage options on Azure Kubernetes Service, as well as Portworx as an example of a proprietary Software Defined Storage (SDS) solution. There are also a number of open-source alternative SDS solutions. Ceph has nearly a decade of history from prior to containerization, and is the most widely adopted storage platform. In this post, we continue to explore Ceph as an open-source storage solution on Azure Kubernetes.

Ceph by Rook

Ceph is an open-source SDS platform for distributed storage on a cluster and provides object, block and file storage. Installation of Ceph SDS can be complex, especially on Kubernetes platform. Rook is a graduated CNCF project to orchestrate storage platform. Rook by itself is not SDS and it supports:

Ceph: configure a Ceph cluster. Think of this as the equivalent of cephadm on Kubernetes platform.
NFS: configure an NFS server. Think of this as the equivalent of nfsd daemon on Kubernetes platform.
Cassandra: an operator to configure a Cassandra database cluster. It is now deprecated.

We play with Rook Ceph. I also refer to it as Ceph by Rook. The contribution of Rook project is it simplifies the installation as a matter of declaring custom resources using CRDs. Here are some high-level CRDs to know:

CephCluster: creates a Ceph storage cluster
CephBlockPool: represents a block pool
CephFilesystem: represents a file system
CephObjectStore: represents an object store
CephNFS: spins up a NFS Ganesha server to export NFS shares of a CephFilesystem or CephObjectStore.

As with typical Kubernetes resources in controller pattern, Ceph by Rook needs an operator along with custom resources. We can use YAML manifest for both of them, and the manifests are usually very tediously long. We can also use Helm to install both of them, by providing a value file. Now we will install Ceph on AKS.

Install Ceph Operator on AKS

The steps are influenced by two relevant posts (here and here). However, I’ve incorporated the cluster configuration in the Azure directory of the cloudkube project, a modular Terraform template to configure AKS cluster and facilitate storage configuration. The node group and instance sizes are selected to be just enough to run a ceph POC cluster with minimum cost. One of the node groups is tainted with storage-node, as if the following command were run:

kubectl taint nodes my-node-pool-node-name storage-node=true:NoSchedule

You will only need to taint the nodes with the command above if you choose not to use the cloudkube template. The taint ensures that only Pods with corresponding toleration and effect can be scheduled to those nodes.

We use Helm to install Rook Operator. We need a value file (e.g. rook-ceph-operator-values.yaml) with content as below:

# https://github.com/rook/rook/blob/master/Documentation/Helm-Charts/operator-chart.md
crds:
 enabled: true
csi:
 provisionerTolerations:
 - effect: NoSchedule
 key: storage-node
 operator: Exists
 pluginTolerations:
 - effect: NoSchedule
 key: storage-node
 operator: Exists
agent:
 # AKS: https://rook.github.io/docs/rook/v1.7/flexvolume.html#azure-aks
 flexVolumeDirPath: "/etc/kubernetes/volumeplugins"

Then we install the operator with Helm:

helm install rook-ceph-operator rook-ceph --namespace rook-ceph --create-namespace --version v1.9.6 --repo https://charts.rook.io/release/ --values rook-ceph-operator-values.yaml
kubectl -n rook-ceph get po -l app=rook-ceph-operator

After installing the operator, we check the Pod status to make sure it is running. Then we can install the actual Ceph Cluster in one of the two ways. We can declare a CephClusterCRD ourself, or we can use Helm again to declare the CRD. Helm Chart gives us a lot of useful default values and saves us from editing a large body of YAML manifest.

Install Ceph CR on AKS

We use Helm to install CephCluster CRD. We create a value file (e.g. rook-ceph-cluster-values.yaml) with content as below:

# https://github.com/rook/rook/blob/master/Documentation/Helm-Charts/ceph-cluster-chart.md
operatorNamespace: rook-ceph
toolbox:
 enabled: true
cephObjectStores: [] # by default a cephObjectStore will be created. Setting this to null disables it
#cephBlockPools: # by default a cephBlockPool will also be created with default values
#cephFileSystems: # by default a cephFileSystem will also be created with default values

cephClusterSpec:
 mon:
 count: 3
 volumeClaimTemplate:
 spec:
 storageClassName: managed-premium
 resources:
 requests:
 storage: 10Gi
 resources:
 limits:
 cpu: "500m"
 memory: "1Gi"
 requests:
 cpu: "100m"
 memory: "500Mi"
 dashboard:
 enabled: true
 storage:
 storageClassDeviceSets:
 - name: set1
 # The number of OSDs to create from this device set
 count: 3
 # IMPORTANT: If volumes specified by the storageClassName are not portable across nodes
 # this needs to be set to false. For example, if using the local storage provisioner
 # this should be false.
 portable: false
 # Since the OSDs could end up on any node, an effort needs to be made to spread the OSDs
 # across nodes as much as possible. Unfortunately the pod anti-affinity breaks down
 # as soon as you have more than one OSD per node. The topology spread constraints will
 # give us an even spread on K8s 1.18 or newer.
 placement:
 topologySpreadConstraints:
 - maxSkew: 1
 topologyKey: kubernetes.io/hostname
 whenUnsatisfiable: ScheduleAnyway
 labelSelector:
 matchExpressions:
 - key: app
 operator: In
 values:
 - rook-ceph-osd
 tolerations:
 - key: storage-node
 operator: Exists
 preparePlacement:
 tolerations:
 - key: storage-node
 operator: Exists
 nodeAffinity:
 requiredDuringSchedulingIgnoredDuringExecution:
 nodeSelectorTerms:
 - matchExpressions:
 - key: agentpool
 operator: In
 values:
 - storagenp
 topologySpreadConstraints:
 - maxSkew: 1
 # IMPORTANT: If you don't have zone labels, change this to another key such as kubernetes.io/hostname
 topologyKey: topology.kubernetes.io/zone
 whenUnsatisfiable: DoNotSchedule
 labelSelector:
 matchExpressions:
 - key: app
 operator: In
 values:
 - rook-ceph-osd-prepare
 resources:
 limits:
 cpu: "500m"
 memory: "4Gi"
 requests:
 cpu: "500m"
 memory: "2Gi"
 volumeClaimTemplates:
 - metadata:
 name: data
 spec:
 resources:
 requests:
 storage: 100Gi
 storageClassName: managed-premium
 volumeMode: Block
 accessModes:
 - ReadWriteOnce

During the cluster provisioning, there will be a number of preparing Pods. We want those Pods to run on nodes with label agentpool=storagenp. In real life, we need to orchestrate where to run each workload, by restricting the nodes to schedule certain types of workload.

Then we can install the cluster using Helm:

helm install rook-ceph-cluster rook-ceph-cluster --namespace rook-ceph --create-namespace --version v1.9.6 --repo https://charts.rook.io/release/ --values rook-ceph-cluster-values.yaml

After running the Helm install, it may take as long as 15 minutes for all resources to settle. Watch the Pod status in rook-ceph namespace. At the end, make sure that the cluster is created successfully:

kubeadmin@pro-sturgeon-bastion-host:~$ kubectl -n rook-ceph get CephCluster
NAME DATADIRHOSTPATH MONCOUNT AGE PHASE MESSAGE HEALTH EXTERNAL
rook-ceph /var/lib/rook 3 15m Ready Cluster created successfully HEALTH_OK
kubeadmin@pro-sturgeon-bastion-host:~$ kubectl -n rook-ceph get cephBlockPools
NAME PHASE
ceph-blockpool Ready
kubeadmin@pro-sturgeon-bastion-host:~$ kubectl -n rook-ceph get cephFileSystems
NAME ACTIVEMDS AGE PHASE
ceph-filesystem 1 20m Ready

In my case it took 15 minutes before the cluster comes up as created successfully. You should notice that two storage classes were also created as a part of the install. It however did not create a storage class or CRD for object storage, because we explicitly disabled it in the Helm value file by setting cephObjectStores value to null.

Dashboard

We enabled dashboard. To configure the dashboard view properly, we would need an ingress. For a quick view here, we can play port forwarding tricks. First we fetch the admin password for use in the next step. Then expose the dashboard to the bastion host:

$ kubectl -n rook-ceph get secret rook-ceph-dashboard-password -o jsonpath='{.data.password}' | base64 -d
$ kubectl -n rook-ceph port-forward svc/rook-ceph-mgr-dashboard 8443:8443

Since I don’t have UI on the bastion host, I use the port forwarding trick again from my own MacBook. Start a new terminal and SSH to the bastion host with port-forwarding switch:

$ ssh -L 8443:localhost:8443 kubeadmin@20.116.132.8

The command above suppose the public IP of the bastion host is 20.116.132.8. Then from my MacBook I can browse to localhost:8443 (with Safari browser which gives me the option to bypass certificate error). At the web portal, provide username (admin) and password (as retrieved above):

Ceph console for Kubernetes

Apart from the dashboard, we can also use ceph admin tool from a toolbox pod, following this instruction. For monitoring, Ceph by Rook can expose metrics for Prometheus to scrape.

Performance

With default ceph configuration on AKS, I ran quick performance test using kube-str . The result is as follows:

	read_iops	write_iops	read_bw	write_bw
ceph-block	IOPS=464.507294 BW(KiB/s)=1874	IOPS=243.296143 BW(KiB/s)=989	IOPS=509.928162 BW(KiB/s)=65797	IOPS=248.530762 BW(KiB/s)=32338
ceph-filesystem	IOPS=438.701324 BW(KiB/s)=1770	IOPS=226.270660 BW(KiB/s)=920	IOPS=405.936340 BW(KiB/s)=52456	IOPS=208.869293 BW(KiB/s)=27229

The metrics reflects performance under default configuration. It should not be considered as the best performance that Ceph can deliver on Azure Kubernetes.

Summary

I discussed three storage options for Azure Kubernetes but the idea applies to other Kubernetes platform hosted on a CSP. The native storage has significant limitation. NFS has latency. Block storage does not address high availability at the storage layer. Portworx and LINSTOR fill that gap as a commercial solution. Ceph is based on Object storage.

Intro to Ceph storage

Thu, 21 Jul 2022 18:55:00 -0400

Ceph is a unified, distributed storage system designed for excellent performance, reliability and scalability. In this post, I will introduce Ceph and explain how it stands out from traditional enterprise storage technology.

Software defined storage

In the realm of enterprise storage, I discussed PowerScale (Isilon) from Dell EMC, and touched on ONTAP by NetApp as an alternative. These solutions usually include both enterprise grade hardware, and the software layer that manages those expensive hardware. As the competition with cloud storage arises, those vendors start to decouple the software layer from the hardware to sell them separately. As a result, clients have the options to use commodity hardware. On the other hand, the software layer is built to be more accommodative to different hardware options. Eventually, the software layer evolves into Software Defined Storage (SDS) with the purpose of supporting cheaper storage hardware.

This table shows the full solution offering and SDS offering from NetApp and Dell EMC:

	Full solution offering	SDS offering
NetApp	ONTAP	ONTAP Select
EMC	PowerScale	PowerFlex

It is not easy to make a proprietary SDS appliance support commodity hardware. For example, PowerFlex currently supports (and bundles with) DELL’s commodity hardware only. It is most likely an involuntary move. Then, why would these commercial providers even be motivated to support a broader range of hardware by moving to SDS? It is because they face fierce competition from open-source SDS technologies, which were born to support commodity hardware. In this family of technologies, Ceph is a rising star. This family also includes other technologies such as Gluster and HDFS.

Note that the performance of a storage based on SDS still has to do with the underlying hardware. Therefore, comparing Ceph storage with PowerScale is apple to orange, without identical storage hardware. Now that we decoupled SDS and hardware, let’s take a look at two important aspects of SDS: the distributed technology to manage hardware, and the interface it provides to storage clients.

Distributed storage

The reason to use an SDS layer to manage hardware in a distributed architecture is for better scalability and high availability. The soul of this SDS layer is the ability to manage distributed system. However, a distributed storage introduces problems of its own, such as coordinating consistency. Different storage technologies have their own way to tackle these problems. For example, with PowerScale, OneFS has its own Group Management Protocol. Ceph uses CRUSH for data distribution. GlusterFS uses DHT(Distributed Hash Table) Translator.

Storage architects usually do not need to know these technologies in detail. It is not the intention of this post to cover the details of any distributed technology in any of the storage options above. However, storage architects needs to know supported API very well.

Access API

The supported access API of a storage system determines its compatibility with client systems. One good example is NFS for file storage, which defines the protocol for file share without defining the underlying implementation. Most GNU/Linux distributions come with nfsd (NFS server) which exports directories on XFS or ext4 FS as a file share with NFS protocol. In order to transfer data over network, NFS uses RPC, a request-response protocol. With object storage, S3 is a widespread protocol. Below is a list of storage implementations and their supported access API:

Ceph supports librados, S3, Swift and FUSE
GlusterFS supports SMB, NFS, FUSE,
PowerScale supports NFS, SMB/CIFS, HDFS, Object, POSIX

CephFS is distributed file system built on top of Ceph RADOS. It is also a client-server architecture. A Ceph Client, via librados, interacts directly with OSDs to store and retrieve data. In order to interact with OSDs, the client app must invoke librados and connect to a Ceph Monitor. For compatibility, CephFS namespaces can be export over NFS protocol using NFS-Ganesha NFS server.

Ceph Architecture

Ceph is a high-performance, distributed storage platform. It provides object storage, block storage and distributed file system, all backed by a single, reliable storage cluster running on commodity server hardware. A Ceph Storage Cluster consists of Ceph Nodes on a network. A Ceph Storage cluster requires at least one Ceph monitor (ceph-mon), Ceph Manager (ceph-mgr) and Ceph OSDs (ceph-osd). For file system clients, it also requires Ceph Metadata Server (MDS, ceph-mds) to allow user to execute basic commands on POSIX file system (e.g. ls, find)

Under the hood, Ceph stores data as objects within logical storage pools. Using the CRUSH algorithm, Ceph calculates which placement group (PG) should contain the object, and which OSD should store the placement group. The CRUSH algorithm enables the Ceph Storage Cluster to scale, rebalance, and recover dynamically.

Ceph is based on RADOS (reliable autonomic distributed object store), a self-healing system that distributes and replicates data across nodes. It then layers CephFS (a distributed file system), block storage service (RADOS Block Device or RBD), and s3-compatible object storage (RADOS Gateway or RGW) on top of RADOS. For a better description, refer to this page. The chart above shows how Ceph interacts with different kinds of client. For CephFS, the client can interact with the file system via metadata daemon, as illustrated below. This diagram looks similar to the diagram for NFS.

In a RADOS cluster, each server runs some daemons (i.e. OSD, MON or MDS).

When an I/O request occurs, it needs to be mapped to the specific OSD that keeps the storage units. Here is an illustration of the mapping:

As typically observed in distributed system, there is quite some communication overhead to serve a file.

Ceph Cluster Installation

Installing a VM-based Ceph cluster is no trivial effort and there are several methods. The recommended method is Cephadm. Here is a good instruction, where you will notice a lot of steps on each nodes, such as configuring NTP, installing docker, configuring hostname, Linux user and SSH, etc. You may also check this video for how involving it is. Red Hat adopts Ceph project as a product and has an installation guide on its documentation.

Previously, there was a legacy tool ceph-ansible to help administrators with server configuration. It is similar to the way kubespray helps administrators configure Kubernetes cluster. However, the document suggests that ceph-ansible is not integrated with new orchestrator APIs and therefore is not a viable option anymore. Also I did not find a way to install a single-node ceph cluster just for a quick demo. It involves tweaking the CRUSH map configuration.

If we deploy Ceph on Kubernetes for Kubernetes workload, we use Rook, an orchestrator running on Kubernetes, to integrate storage to a cluster.

Cloud Native Storage

Moving to cloud native storage, instead of presenting storage to operating system, we need to configure storage classes for Pods to use persistent volumes dynamically, using storage provisioners. Ceph also shows good presence in cloud native storage ecosystem. In a self-managed Kubernetes cluster, Ceph gives us the capability to configure storage classes to access connected storage. In public cloud, Ceph allows us to configure storage classes connecting to disks attached to the Nodes, an alternative to the cloud vendor provided native storage classes with high availability across availability zones. This layer enables the organization to normalize how their application connects to persistent volumes, a capability particularly helpful in the multi-cloud strategy of the cluster.

Rook is a CNCF project to orchestrate storage system on Kubernetes. It automates storage administrative tasks such as deployment, bootstrapping, configuring, provisioning and monitoring, using declarative templates. It supports Ceph and a number of other storage backends such as Cassandra, NFS, MinIO.