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Build and Manage Kubernetes Clusters

Fri, 23 Sep 2022 11:50:00 -0400

There are numerous options to build a Kubernetes cluster. If your company has a multi-cloud strategy, most likely you will have to deal with cluster creation on multiple cloud platform or on virtual machines on premise.

Most likely, the chosen cloud platform already make it simple for us. However, it is still important to understand what it really takes to build a Kubernetes cluster. In general, we need to figure out these tasks:

Decide where to host the computing infrastructure (i.e. Node) : on premise or public cloud;
Choose a Kubernetes release: either the vanilla release or one of the third-party distributions;
Install Kubernetes to the computing environment, and integrate it with the cloud platform;
Determine required add-ons (e.g. Istio or Linkerd for Service Mesh, dashboard utility, etc);
Deploy application workload to Kubernetes platform;

A public cloud platform provider usually can assist you with task 1 through 3, and partially 4, depending on the provider. If your Kubernetes resides on private cloud or on-prem environment, you can use a Platform solution such as VMware Tanzu or Openshift, which usually covers task 1, 3 and 4. There is no standard about what task these platform solution must address. Therefore it is important to have this list of tasks in mind in order to make a good comparison. I will discuss each of the tasks in this post.

Hosting environment

Nodes are the building blocks of a Kubernetes cluster. We need master nodes as well as worker nodes. In addition, a working cluster also requires storage, and networking infrastructure.

Public cloud platforms typically provides control plane as a service, obviating administrator’s effort to provision master nodes. For example, the control plane of Azure AKS has two levels of uptime commitment: a free tier of 99.5% SLO and a paid tier with an SLA of 99.95% (using AZs) and 99.9% (without using AZs). This uptime commitment applies to control plane only and do not apply to worker nodes. The management of etcd store is also a responsibility of the cloud provider, which frees up the cluster administrator from managing etcd store. However, they cannot access etcd store either. This is not very convenient because as the size of the cluster grows it is a common requirement to connect to etcd store for troubleshooting purpose.

The deployment APIs for public cloud allow the cluster administrator to define the instance size, count and availability zone for the worker nodes. They also automatically register the worker nodes to control plane so that the cluster administrators do not have to do so by themselves. As to storage, the public cloud usually provide some default storage classes based on their storage as service. For networking device, the cluster provision process automatically configures the cloud API so the cluster can manage cloud resources such as network load balancer.

With private cloud or data centre, we usually use virtual machines, or bare-metal servers. Cluster administrators will need to make their own control plane with master nodes. and install worker nodes and register them to the master nodes. The Kubernetes Installation section below will discuss this.

Kubernetes release

If you have to install Kubernetes, you have to think about the Kubernetes release being used. You can use the binary from official Github repository. For example, the release note of version 1.24.3 points to the change log file for download links to server binaries, node binaries. This is the vanilla Kubernetes release.

Apart from the vanilla release, many developers build their own distributions, based off forks of the Kubernetes project. CNCF has a page to keep track of certified Kubernetes distributions. Some of the distributions are open source and can be used for on-prem infrastructure. Here is a list of top players:

Distribution Name	Repo	Description
EKS Distro	Link	Used in EKS managed service or EKS Anywhere for on-prem infrastructure
AKS Engine	Link	Used in Azure Stack for on-prem infrastructure.
Google Kubernetes Engine	N/A	Used in GKE managed service only.
OpenShift Kubernetes Engine	Link	Community distribution (OKD, or OpenShift Kubernetes Distribution) is the open-source upstream.
Rancher Kubernetes Engine (RKE)	Link	still using Docker as container runtime. Supported CNI include: Canal, Flannel, Calico and Weave
K3s	Link	Lightweight distro without small resource requirement. Great for Edge, IoT, ARM etc
RKE2	Link	Originally named RKE government. Supports deployment via Cluster API. Supports containerd as container runtime. Supported CNI include: Cillium, Calico, Canal and Multus. Lightweight
VMware Tanzu	Link	VMWare Tanzu Grid and VMWare Tanzu Community

Above is just a very incomplete list of Kubernetes distributions. There are many more distributions that are not on this list, such as CoreOS Tectonic, Docker Kubernetes, Heptio, Mesosphere, Mirantis, Platform9, Stackube, Telekube. For full details of how each distribution is different, you will need to go over their documents.

With the selected distribution, we still need to deploy the binaries to the nodes. We can do this with a cluster management platform, or standalone installers. Cluster management platform can also help us with baseline configuration (e.g. IAM integration, CNI plugin), in addition to the binary installation.

Cluster Management Platform

These platforms are also sometimes referred to as container management platform.

For example, OpenShift container platform is a self-managed platform based on OpenShift Kubernetes Engine and can run on a variety of hosting environment, public cloud, or private cloud. The installation steps varies depending on the hosting environment. When running on public cloud such as AWS (aka ROSA), the public cloud only provides computing nodes and associated infrastructure. Many corporate with multi-cluster strategy use this option on public cloud to keep their Kubernetes cluster fleet consistent across cloud vendors.

The Openshift container platform also packages some useful open-source add-ons with corporate support, for example:

Red Hat’s strategy is to pick the most renowned open-source project in each domain and add enterprise support to it. However, for management portal, Red Hat developed its own Advanced Cluster Management tool for Kubernetes, and open-sourced it in 2020 in the upstream project Open Cluster Management.

Similar to OpenShift, VMware Tanzu also attempts to cover the domains, with a smaller product portfolio:

Service Mesh: compatible with Istio
Mission Control: management portal
Observability

Google Anthos is also a container platform. Their product line include, but not limited to:

Anthos Config Management (ACM)
Anthos Service Mesh (ASM, an Istio distribution)

SUSE, the developer of RKE, RKE2, and K3s) offers Rancher as multi-cluster management platform. Apart from the engines, SUSE also offers Lonhorn as a storage solution. However, they do not have offerings for service mesh or GitOps. So there is no doubt that Red Hat OpenShift has the most complete portfolio for Kubernetes.

There are also companies that only offers management platforms without their own Kubernetes distribution. For example:

Product capabilities in this category vary a lot and you should refer to their specific documentation to understand. You will probably see a stack chart from each of the platform provider (e.g. SUSE Enterprise Container, OpenShift, Tanzu, Anthos, Rafay) with all technology integrations.

Cluster Installation Tools

As we saw in the installation steps for OpenShift, they are highly dependent on platform. With public cloud, the provisioning process also applies only to a specific platform. Since Kubernetes Installation process is tedious, some tools emerged to help, for example: kubespray, kubeadm, kops and Cluster API. These are governed by SIG cluster lifecycle special interest group.

Here are some traditional options to install a Kubernetes clusters:

kube-up: the first tool to build cluster from 2015. It has been deprecated.
Kubeadm: a tool built to provide best-practice “fast paths” for creating Kubernetes clusters that are minimum viable, and secure. Kubeadm’s scope is limited to the local node filesystem and the Kubernetes API, and it is intended to be a composable building block of higher level tools. It is first released in Sep 2016. The high level configuration steps goes through initialization (kubeadm init), control plane (kubeadm join control plane), and node (kubeadm join node). Kubeadm does not integrate with cloud providers and it does not install addons (auth, monitoring, CNI, storage class)
Kubespray: runs on bare metal or VMs using Ansible for provisioning and orchestration. The first release was in Oct 2015. Since v2.3 (Oct 2017) kubespray started to use kubeadm internally. In addition to kubeadm, kubespray configures CNI, storage class, other CRI. It supports cloud providers and air-gap environment. However it does not support infrastructure management.

The options above are official options. You may use kubeadm and kubespray to quickly (i.e. in an hour) spin up clusters for education purposes. However, with their limitations, it typically requires a lot of efforts to build a production-grade cluster with the needed addons and integrations.

Apart from the official options, there are also unofficial tools such as kubicorn, which was first introduced in 2018 as a cluster management framework with modular support for cloud providers. However it appears to be short-lived.

In the next two sections, we introduce kops and cluster API, two most recent projects to install cluster.

Kops

The kops utility directly perform the provisioning and orchestration via API to the cloud deployment engine. Kops, with first release in Oct 2016, is tightly integrated with the unique features of the cloud providers (e.g. AWS: ASG, ELB, EBS, KMS, S3, IAM). However, kops is only CLI without controller-style reconciliation. It does not support baremetal or vsphere. It also bundles addons with fixed version.

When picking a tool to install cluster, we need to strike a balance between how much simplification the tool brings, and how many different platform the installer can work with. Kops appears to be such a good compromise. It works with a number of cloud platforms using different set of APIs, although most are in alpha and beta stages today. Here is how to install cluster on AWS.

Both kops and Cluster API have good momentum but they work differently. Cluster API was first released in Mar 2019, and is currently less mature than kops. However, it is declarative and may reflect the direction of where cluster lifecycle management is heading.

Cluster API

Cluster API focuses on following areas:

Manage cluster lifecycle declaratively
Infrastructure abstraction (e.g. computing, storage, networking, security, etc)
Utilizing existing tools (e.g. kubeadm, cloud-init)
Modular and pluggable: to be adaptable to different infrastructure providers.

It involves a number of CRs as illustrated in its diagram. We should be clear on the providers for Bootstrap, Infrastructure and Control Plane.

The biggest benefit is the controller pattern to manage the entire lifecycle of a cluster. This allows managing clusters with GitOps, and rolling upgrade of the cluster. It also allows for declarative node scaling, self healing and multi-cluster management.

The client utility for is clusterctl, and with that along with the manifest, we can create a cluster in a few commands. A lot of workflows are still in development but we can take a look at its quick start guide to get a taste of how it works. The installation steps vary a lot based on the environment and the cluster. Also it introduces the separation of management cluster and workload cluster.

Workload cluster is the target cluster being created, as per the manifests.
Management cluster is where you keep track of the workload cluster being managed. You can manage multiple workload clusters from a single management cluster. Note that this management cluster will store credentials about workload clusters, and may become a single point of failure.

Although Cluster API reflects a great initiative to standardize the provisioning of Kubernetes cluster, whether it will succeed has to do with the level of complexity. In the next section, we will get a taste of how it looks to deploy a Kubernetes cluster in a lab.

Management cluster vs workload cluster

In the lab, I use my MacBook to create a management cluster with KinD. Then we configure a workload cluster in AWS from the management cluster.

Cluster API Lab

Note that the steps here are based on the quick start guide on Cluster API document. Also, there is a bug with the AWS provider so the end of the lab will report a warning. The main purpose of this lab is to demonstrate how Cluster API is supposed to work, even though it still has yet to mature.

To start, I install clusterctl (the cluster API client utility), clusterawsadm (the utility specific for AWS) on MacBook, then start a simple KinD cluster.

curl -L https://github.com/kubernetes-sigs/cluster-api/releases/download/v1.2.0/clusterctl-darwin-amd64 -o clusterctl
chmod +x ./clusterctl
sudo mv ./clusterctl /usr/local/bin/clusterctl
clusterctl version

curl -L https://github.com/kubernetes-sigs/cluster-api-provider-aws/releases/download/v1.4.1/clusterawsadm-darwin-amd64 -o clusterawsadm
chmod +x clusterawsadm
sudo mv clusterawsadm /usr/local/bin
clusterawsadm version

kind create cluster

So far, I installed the required utility and a KinD cluster on MacBook. Then I use clusterawsadm to create InstanceProfile, ManagedPolicy and IAM Roles required for cluster creation. The AWS region and access are configured as environment variables:

export AWS_REGION=us-east-1
export AWS_ACCESS_KEY_ID=AKIAXXXXXXXXXXX
export AWS_SECRET_ACCESS_KEY=J8ByduiofpwuisDjDoijOISDs
clusterawsadm bootstrap iam create-cloudformation-stack

This runs a CloudFormation stack to create the permission related resources:

Then I initialize the management cluster with the clusterctl utility, specifying AWS as a provider. I also need to assign the environment variable AWS_B64ENCODED_CREDENTIALS with proper value:

export AWS_B64ENCODED_CREDENTIALS=$(clusterawsadm bootstrap credentials encode-as-profile)
clusterctl init --infrastructure aws

Now I use clusterctl to generate the manifest for the workload cluster. In environment variables, I specify cluster and node sizes, SSH key name, control plane machine type and node machine type:

export AWS_SSH_KEY_NAME=cskey
export AWS_CONTROL_PLANE_MACHINE_TYPE=t3.large
export AWS_NODE_MACHINE_TYPE=t3.large
clusterctl generate cluster myekscluster --kubernetes-version 1.24.3 --control-plane-machine-count=3 --worker-machine-count=3 > capi-quickstart.yaml

kubectl apply -f capi-quickstart.yaml

At the end I tell the management cluster to create a workload cluster as per the manifest, by simply declaring the CRs. It will take some time for the cluster to create, and there are a number of ways to monitor the progress. You can monitor the log on the controller pods in their respect namespaces. You can also check the cluster status with:

kubectl get kubeadmcontrolplane
clusterctl describe cluster myekscluster

Currently there is a bug and the commands at the end will report as below:

Hopefully the bug will be fixed shortly. To delete the cluster, simply delete the resources in the manifest with kubectl delete -f capi-quickstart.yaml

Summary

There are numerous ways to build a Kubernetes cluster. Before deciding on the approach, I recommend having a full understanding of the hosting environment. This is because installation approach and hosting environment are still tightly coupled. This is the status quo and is not going to change in the near future. Both kops and cluster API reflects initiative to decouple the two but both are still in early stage and already facing growing complexity. Cluster API manages complexity with CRDs to abstract system resources and infrastructure, as illustrated here:

CRDs and providers to abstract system resources and infrastructure

The diagram is from the “Cluster API and declarative Kubernetes Management” white paper. Here is a stream with more about the same topic.

AWS CDK example in Python – provision Kubernetes Nodes

Thu, 03 Dec 2020 21:14:00 -0400

There are two mechanisms to initialize instances in AWS. Cloud init and CloudFormation Init. Both are widely used and we discuss each of them in this posting. Then we will give an example of using AWS CDK in Python.

Cloud-Init

Cloud-Init is a service originally built for Ubuntu, as a bootstrapping utility to customize a Linux VM as it boots for the first time. It has evolved to be an industry standard multi-distribution method for cross-platform (public or private) cloud instance initialization, or even bare-metal installation. In cloud-init you can install packages and write files, or configure users and security. Because cloud-init is called during the initial boot process, there are no additional steps or required agents to apply your configuration.

Cloud-Init uses UserData, which is part of instance metadata. With AWS, you can pass two types of user data to Amazon EC2: shell scripts and cloud-init directives.

The cloud-config files are text files encoded in base64, with more details covered in the documentation here. cloud-init also works across distributions. For example, you don’t use apt-get install or yum install to install a package. Instead you can define a list of packages to install. cloud-init automatically uses the native package management tool for the distro you select.

CloudFormation Init

The cloudformation init mechanism does not only initialize instance, it also provides a mechanism for the resource being created to communicate with other resources. It allows an instance to emit signal to a different resource (via cfn-signal). It can also monitor changes to external resource and invoke local action (using cfn-hup with hooks). CloudFormation Init requires several components to work together:

The cloudformation resource should have metadata. The metadata must have a key AWS::CloudFormation::Init in which configsets are declared.
The UserData must use helper script (cfn-init) to invoke configuration jobs
The UserData can use helper script (cfn-signal) to signal with a CreationPolicy or WaitCondition (of the same or different resource), so you can synchronize other resources in the stack when the prerequisite resource or application is ready.
The cfn-hup service on the instance can be configured, to check for updates to metadata and execute custom hooks when changes are detected.

Comparison

While there are overlaps between the functionalities of Cloud Init and CloudFormation Init, the major difference is the latter support extended features (signal, update, etc); whereas the former is vendor neutral. The table below summarized some the differences:

	Cloud Init	CloudFormation Init
Works on	Linux OS distribution	CloudFormation resource, in combination with cfn helper scripts
Usecase	Initialization only	Both initialization and resource update
Trigger	cloud-init systemd service	Initial: from UserData Update: by cfn hook
Adoption	Multiple cloud vendors and bare-metal system	AWS cloud instances
Action Playbook	/var/lib/cloud/ Instance Metadata -> User Data, encoded in base 64	CloudFormation Resource -> Metadata section -> AWS::CloudFormation::Init -> configSets and configs
Log file and stdout	/var/log/cloud-init.log /var/log/cloud-init-output.log	/var/log/cfn-init.log /var/log/cfn-init-cmd.log

Comparison between cloud-init and cfn-init

AWS Cloud Development Toolkit (CDK)

Traditionally, AWS CloudFormation uses template in YAML or JSON for resource declaration. As the size of system grows, the amount of resource involved grows quickly and the size of such declaration file may grow beyond manageable. Nested stacks and export of output are mechanisms designed to combat the template sprawling, but to a very limited extent. Two reasons it is hard to control template size are:

In declarative statements, each line carries very small piece of information. Without flow controls such as if-else, loops, object oriented structure, the level of code reusability is very low;
Some auxiliary resources (such as AWS::EC2::VPCGatewayAttachment) must be declared explicitly, even though they are insignificant to the stack functionality

To address these challenges, AWS introduced AWS CDK (cloud development tookkit), which supports multiple languages (JavaScript, TypeScript, Python, Java, and C#). The CDK was natively developed in TypeScript, which is supposed to be the preferred development language. A tutorial is provided here, with detailed API documentation here.

To install aws cdk and create a hello world project, follow this example.

An Example in Python

I have created an example for AWS CDK in Python. The purpose is to create some EC2 instance to complete a lab for Kubernetes (without using managed EKS service). The example provisions the followings:

VPC, a public and private subnets, Internet and NAT gateways;
Relevant security groups and permissions
Bastion host, public instances in public subnet
Private instances in private subnet, with public route through NAT gateway

The private instances forms a cluster for Kubernetes lab. We will use kubespray to initialize these instances. During the bootstraping, we download kubespray, install ansible, etc.

Here is the code repo for this example. With CloudFormation only, the single template could go well beyond 1000 lines. With CDK, the code are organized into several different python files, each representing a stack. The stacks can be stood up with command:

cdk deploy vpc-stack
cdk deploy security-stack
cdk deploy bastion-stack
cdk deploy private-stack

Although the documentation in Python is available, there are generally not a lot of examples built out on the Internet. The pypi site provides some Python specific examples for each module (e.g. core and aws-ec2). Given these libraries are available for only 2 years (since 2018), many advocates TypeScript as the language. However, I have implemented some CloudFormation init, used helper script, and UserData in this example, without running into any language specific issues.It should be noted that the EC2 instance by default will call cfn-init. So there is no need to explicitly run cfn-signal or cfn-init from user data in python code (example). This can be verified in file /var/lib/cloud/instances/<instance-id>/user-data.txt which automatically includes the following lines:

# fingerprint: e1b32ead13878deb
(
 set +e
 /opt/aws/bin/cfn-init -v --region us-east-1 --stack bastion-stack --resource bastionhost5F466975da9934ba490de456 -c config_set_1,config_set_2
 /opt/aws/bin/cfn-signal -e $? --region us-east-1 --stack bastion-stack --resource bastionhost5F466975da9934ba490de456
 cat /var/log/cfn-init.log >&2
)

In addition to Python, AWS CDK also supports other languages. In the next post, we will discuss use of CDK in Typescript.